Pleuronectes platessa (European plaice): 128437378
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Entry
128437378 CDS
T09923
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pplt03009
]
128437378 (pdcd11)
Ribosome biogenesis [BR:
pplt03009
]
Eukaryotic type
90S particles
Other 90S particles
128437378 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
Suf
OB_RRP5_4th
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
UTP6_C
TPR_CcmH_CycH
ARM_TT21
TPR_15
ARM_TT21_5th
DUF7017
PPR
Motif
Other DBs
NCBI-GeneID:
128437378
NCBI-ProteinID:
XP_053275478
LinkDB
All DBs
Position
3:22344142..22362873
Genome browser
AA seq
1812 aa
AA seq
DB search
MASAEEDFPRGGTAKKSTDGKPVVHRGEVDNLFQSNELAEAKKKRKVALKDEAKKLKKQK
TGKEKSDGLALNAAAKCVEILHLKHLKEGMLMLGCVKDVADFEVTVSLPCGLQGFLNIRN
ISDSYTKLLSEQLDSADTEDIFSLPHLFSPGMVIRCVIAKLDVAKGGSLSIQLSVNPKLV
NKALTSSSVKAGMILSGCVESVEDHGCIIDIGISGSKAFLSKTADKQNTLDDLKVGQFLT
CKVEEVKNEGRMVRLSINPLTVAQACAKAEQGWNLTNLLPGLLVKATIKKMTKHGLILDF
LTSFSGQVDFLHMDPEQKSNYAEGTELYACVLYVEQSTRLVGLSLRSYLVQPEQRVDPAP
SCGDRIGQVVKNCKMTTVHHMSGAMLELPDEMLAFVHRNHMKEMNTPTNENRVLAKPVHT
CRILDFSPIDQIHFASLRRSVIERPFYRYNDLQAGQIVEGKVSVLLTHGMVVHLSDHIKG
LVPRTHLSDILLKNPEKKYVEGMKVKCRVLSVDPVTKKLYLTRKKALVETALPLFLTFND
ARPGCISQGYIVCIKSFGCIIRFYNNVKGLVPISELSSEPIISPEEVFYIGQVLKAKVLK
CDPEKEKMVLSFKGAVEGDTEKAAKLQDDCEVGKQVEAKVLKKLVNGLEVSILPDDIRAI
LPTMHLSDHMSNCPLLWESLQEGDDVSNLVCFSNSKQISLTKKPTVCWALEEGLVAKDFS
EITVGMQLIGWVKNIMSYGVFVEFPYGLVGLAPKSAMTDKFVSDTAAAFQLGQTVIAKVT
NLDEEKRRFLVTLKISEVIPRDGDAQTRLINGLQERRALNEVLATKDNCDLRQQLTALCV
GQMLKLTVDTVNDDGATFKSHDLVSATVLANKYHVMGVSLTVGQKVTAVILHVDILSSFV
HVSILPKLVEKKKTLIEGSKHRATVQYLDKDFAVVSLDNTGKLTVIQTRSQLNEVLLSES
EKLKPGMSLAVEVTEPSCQELQGLPLVSWQRSAPKRQRTTSDNQQDSKGHCFGETLEGKV
RTVKPVSIQVTLEDGSTGSVHVSEVMEVAKVCPGSFPTSSVKVGSTVTARVIGGREAVSN
RFLPFSHPKFTYTIPELTLIPSKLEKSSDFKQVGAKEILNTYTVGEDITCFVSKFNPKKK
LLEVTTDPRITGTVELLAMITDPKDASHPEKLYKLGQAIRAKVVETSSKPHRFVLSLTGV
HKLEEGSISLGMVTLIQPQGLVVKLPFGGKGYVAVTELADAYRPNPLDVYSTDQLLRCFL
IACENDKWQLSLRPSRLNPQQAKLVKDPEVLSMDQLKEGQVIRGYVKSVGEQGVFIRLSH
NITGRAQLQQSTKYFVSNHKVLSEHLRPNTLLTTKIFSIDREDGFVNLSLLPVDTGKPDI
LPESLRLPLRLIGEEKKKYDAAKKKRTLSESEQTQAESQVPKKKQKTKKAKGDDNDSGVE
VYFREEEDQEGEQEPKPAAKPVTSSSAAPSRLQVAAGFSWDVGLNSLKPASAAQDGDSSD
GEDQDGSSKPQKKSRHDLEQEKKATEKALVQREVELMNPNLRPEDATAFERLLLASPSSS
LLWLQYMAHHLQATEIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTQETLKK
VFERALQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNRVVWLSFGSFLLQQG
QSDAAAALLQRALKSLPSKESVDVIAKFAQLEFRFGDVEKGRTMLDKVLTSYPKRTDLWS
VFIDLMIKHGSQKEVRVLFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQAVKEKAM
EFVEAKGTEAAN
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcagaggaggacttccctcgaggagggacagcgaagaagagcactgatggt
aaaccagtggttcatcggggtgaagtggacaatctcttccagtcaaacgagctggccgaa
gcgaaaaagaaaagaaaggtagcgctcaaagatgaggccaagaaactcaagaagcagaag
acgggcaaagagaagagtgatggtcttgcgctcaacgcagcagccaagtgtgtggaaatc
ctgcatttgaagcatctgaaggagggcatgctgatgctgggctgtgtgaaggatgttgcc
gactttgaggtgacggtcagtctgccgtgtggtctgcaaggtttcctcaacatcaggaac
atcagtgactcgtacaccaagctgctcagtgagcagctggattcagctgacacagaggac
atcttctctctgcctcacctcttctcccccggcatggtgataagatgtgtgattgcaaag
ctggacgtagcgaagggaggctccctgagcatccagctgtcagtcaatccaaagctggtg
aacaaggctctcacctccagctcagtgaaagctggcatgatcttgagtggatgtgtggag
agtgtggaggatcatggctgcataattgacatcggcatcagtgggtccaaagccttcctg
tccaagacagcagacaaacaaaacactctggacgatctgaaagtaggtcagtttttgact
tgtaaagtggaagaagtaaagaacgaaggacgtatggtgcggctctctatcaaccccttg
acggtcgcccaggcctgtgcgaaggccgagcagggctggaacctcaccaacctgctgccc
ggtctgctggtcaaagccacaatcaaaaagatgaccaaacatggtctgatcctggacttc
ctgacctccttcagtggccaggtggactttctgcacatggatccagaacagaaatcaaac
tacgcagaaggaactgagctgtatgcatgtgtgctctacgtagagcagtccacgcgcctc
gtgggtttgagtctgcgcagctacctcgttcagcccgagcagagagtggaccccgctcct
tcctgtggcgaccgcattggtcaggtggtgaagaactgtaagatgaccactgtacaccac
atgtctggagccatgctggaactgcctgacgaaatgttggcatttgtgcacaggaaccac
atgaaggagatgaatacgccaaccaatgagaacagagttctggcaaagcctgtgcacact
tgcaggatcctggacttcagccccatcgaccaaattcattttgccagtctgcgccggagt
gtgattgagaggcctttttatagatataatgatcttcaggctggtcaaattgtggagggg
aaagtgtcagtcctgctgactcatgggatggtggtgcatctgtccgaccatatcaaaggt
ctggtgcctcgaacccacctgtctgacatcctcctgaagaacccggagaagaagtatgtc
gagggcatgaaggtcaaatgtcgggtgctgtcagtggatccagtgactaagaagctgtac
ctgaccagaaagaaggccctggtggaaaccgccctgccgttgttcctcaccttcaacgat
gctcgtcccggctgcatttcccagggctacatcgtctgcatcaaaagcttcggttgcatc
attcgcttttacaacaacgtcaagggtctggtgccgatcagtgagctgagctctgagccc
atcatcagtcctgaggaggtcttctatattgggcaggtgttaaaggctaaggttctcaaa
tgcgaccctgagaaggaaaagatggtgctgtcctttaaaggtgcagtagagggagacact
gagaaagctgccaaactccaggatgactgtgaggtggggaagcaggtggaggccaaagtg
ctgaagaagttagtcaacggtctggaggtttccatcctgcctgatgacatacgagccata
ctacccaccatgcacctctctgatcacatgtccaactgccccctgctgtgggagagcctg
caggagggagacgacgtctcaaacctcgtctgcttcagcaatagcaagcaaatttcgctc
actaagaaaccgactgtgtgctgggcattggaggagggactggttgctaaggatttctct
gagatcacagttggaatgcagctgattggctgggtcaagaacatcatgtcctatggcgtc
tttgtggagttcccatacggcctcgtgggtctggcccccaagtcggccatgactgacaag
ttcgtcagcgacacagcagccgccttccagctgggccagaccgtcatcgccaaggtgacc
aacctggatgaggaaaagcggcgtttcctggtcacgctgaagatttctgaggtcattcct
cgagacggggacgcccagaccagacttattaacggcctgcaggagagaagagctttgaat
gaagtgttagctactaaagataactgtgatcttcgccagcagctgactgctctgtgtgtt
ggtcagatgctgaagttgactgtggacactgtgaacgacgacggagcaacatttaagtct
catgacttggtcagtgccaccgtactggccaacaagtaccatgtcatgggtgttagcttg
accgtaggacagaaagttactgccgtcatccttcatgtcgacatcctgtcttcctttgtc
catgtgtccatccttcccaagctggtggaaaagaagaaaactttgattgaaggatcaaaa
cacagagcgacggtgcagtacctagacaaagactttgccgtggtctcattggacaacaca
ggaaagctgactgtgatccaaaccaggagccagctgaatgaggtcctcctctctgagtca
gagaagctgaagccaggaatgagtttggccgttgaggtgacagaaccaagctgtcaggaa
ctacaagggctccccctagtgtcgtggcaacgctctgcccctaaacgacagcgcacgacc
tccgacaaccagcaggactccaagggtcactgcttcggcgaaaccttggaggggaaagtg
cggacggtgaagcctgtcagcattcaggtcacactggaggatggaagcaccggcagcgtg
cacgtgtcggaggtgatggaggttgccaaagtgtgtccgggatctttcccgacgtcctct
gtgaaggtgggcagcacggtcaccgcccgggtcatcgggggacgagaagccgtcagtaac
agattcttgccattttctcatcccaaatttacatacaccattcctgagctcactctaata
cccagtaaactagaaaaaagttctgatttcaaacaagttggagcaaaagaaatacttaac
acctacacagtcggagaagatattacatgctttgtatcaaagtttaatccaaaaaagaag
ttgttggaggtcaccactgatccacgtattactggcacagtcgaacttctggccatgatc
actgatcctaaagatgccagtcacccagagaagctgtacaagctggggcaagcaattcgt
gctaaagtggtggaaacgagctccaaacctcatcgcttcgtgctctcactcacaggagtc
cataagctggaggaaggcagcatttctttggggatggtgactctcattcagccacaaggc
ctcgtggtcaagcttccctttggtggcaaggggtatgttgctgtcactgagctggctgat
gcctacaggcccaacccactggatgtatacagcacggatcagctcctcaggtgtttcctc
attgcgtgtgaaaatgacaagtggcagttgtctctacgtccatcaaggctgaatccacag
caggccaagctagtgaaagacccagaggttttgtctatggaccaactgaaggaaggccag
gtcatcagaggctacgtcaagtctgtgggagagcagggggtcttcatcaggttatctcat
aatataactggaagagcccaacttcagcagtccaccaagtactttgttagcaaccacaag
gtcctctctgagcacctgcgtcccaacacgctgctcaccacaaagatcttcagtatcgac
agagaggacgggtttgtcaacctctctctgcttcctgtggacaccgggaagccggacatc
ctaccagaatctctccgtctgccactgcggctgattggagaggagaagaagaaatatgac
gctgctaagaagaaacgcactctttccgagagcgaacagacacaagcagagtcccaggtc
ccaaagaaaaagcagaaaacaaaaaaagcgaagggcgacgataatgacagcggagtggag
gtgtacttccgggaggaggaggatcaggaaggtgaacaagaacccaaacctgctgcaaaa
ccggtgacgtccagctcagcagctccatccaggctacaggtggcagcaggtttctcgtgg
gacgtgggcctgaactccctgaagcctgcttcagcggctcaggatggggactccagtgac
ggagaggaccaagatggaagcagcaagccacagaagaagtctcgccatgacctggagcag
gagaaaaaggcgacagagaaggcgctggtacagcgggaagtcgagctcatgaatcccaac
ctgcgccctgaagacgcaactgcctttgagcgtctgctcctggcctcgcccagcagctct
ctgctgtggctccagtacatggctcaccatctgcaggctacagaaatcgagcaggcccgt
gctgtggctgagagggctctcaaaactatttccttcagggaggagcaggagaagctaaat
gtgtgggtggcactgctgaacctggagaacatgtacggcacacaggagaccctgaagaaa
gtgtttgagcgggctctgcagttctgtgagcccatgcccgtctaccagcagctggctgac
atctacgccaagtctgacaagaccaaggaggcagagggcttgtacaagacgatggtgaag
cgtttccgtcagaatagggtggtgtggctgagcttcgggtccttcctgctccagcagggt
cagagtgatgctgccgctgctctcctgcagagggcgctaaaaagcctcccttccaaagaa
agtgtggatgtgatcgccaagtttgctcagctggagttccgttttggtgatgtggagaaa
ggtcgcaccatgcttgacaaagtcctgaccagttatccgaaacgtacagatctctggtct
gtcttcatcgacctgatgatcaaacatggatcccagaaggaagtcagggtgctctttgat
cgtgtgatccacctgagcgtttcagtgaaaaagatcaagtttttcttcaagcgctacctg
gagtacgaaaagaagcatggcaccccacagagcatccaggcagtcaaagagaaggcgatg
gagtttgtggaagctaaaggcacagaggctgcaaactga
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