Pleuronectes platessa (European plaice): 128437921
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Entry
128437921 CDS
T09923
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pplt04131
]
128437921 (vps13a)
Membrane trafficking [BR:
pplt04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
128437921 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
128437921
NCBI-ProteinID:
XP_053276184
LinkDB
All DBs
Position
4:19119793..19154795
Genome browser
AA seq
3271 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSELDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEGKQLQEARQRELNRIEE
TKQKAAEQENPMLEKQDTFVEKMVTQVIKNLTVKISNIHVRYEDDVTNSNCPLSFGVSLK
NLSLQTADKNWNPSLLDENSKLFFKLIQLDSLFAYWNVNSTLFSNHTAEEALQRLQSSME
IQSHAPVSHDFIFRPISADAKLRMNPRSDLDFTYPKLDLIVNLSEVAIELNRSQYISILE
LLGSVDLMSRNLPYRKYRPELDVLKNAHIWWKYVITSVLEVDVKPRLRMWSWQHIRCHRN
MVKRYRELYKTKITSKKPSEELLKQLEELEKTLDIFNITLARQQAEMEASRLGLRIYRPG
LKMEEEESQGWLGWMWNWGGEADAQEKDVKSGGFDELLTPAEKAKLYTAIGYSEIATNPN
LPKNFEDMKVNFHMEKLSLSIKDYKDRNEILRLTVGELHSTLAQRSGAQAIKISAQLSLF
EVTGLASNRPAPTLLSSRKAATGIGTPLLCFLFETNPLDKTADQRLHVESQPLEIIYDAI
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKILDLNMNLMASYV
IIPQTGFYNGTQNIMLLDLGHFKMSSQSRDHLPQLSVCSSNIEDIMSRAYDSFDIQLSSL
QLLYSKPDGDWKKARKQKRSPLHILEPVDLTMAFSRAMVVKDYRMAKYKMSGELPLLSLC
ISDVKLRSVLELLESIPLPESRPAGRSTGAPSTPKPKPLYTPKLTPRRPLNLADQRSSLI
FESCETISISSLGSEEDLFYDAPSSPIGDKAFFSDNPMPLRYAALNKRKSLFKDDAPKNM
TNFILKFDISEFSIQLRRLSGDQEVTVLHLDIDGLGTELKLCTFDMTSNTYLREICLKCP
EYMDSEDEQVQLITTLDNTEVDLLTVEYIKADKNGPEFKSVHNNTEQLIKGTFSSLDVHL
HTEALLNTMNFLNNLLPPTTKKEELPIITEEDEVEVEKEGEKKEEATVAKKKNPKKSKFA
DVVNLHIKADLRCLKVFIRGQNTRISEISIEGLVSEVKMRKKEMEILANLKSIVILDCDK
DSFYKKAVSIADEEVFAFHMVNYTDATEGDAYLDMSKVDLSVSLAVGCIQVIFLNKFVSS
ILAFINNFQEAKEALAEVTAQAAGKAALGVKGLAERSIRIALNVHFNAPVIFVPQSSSST
NVIVADLGLLSVKNRFSKQPFKSDANIPPVVDIMTVRLTDLKMYRTTYVNEGFEGETQLL
KPVSMNLEVQRNLSSNWYHSIPDIGITAHLKPMSLILSQDDMTVVLRTLSENLSEKSDAV
PPSISPPTTDPSSDSTSNKESQCSGTTGQASNNMVVTAAVVETQKNSKLKSTLKLDFKFD
SMTLVVFSPNGNELQLLDSHDEELKLAEFSLDTISTSVHMFSDSSMKASVRLAACLLDDK
RPQIKMVTSRMMAMRPGAEQNMMVEVNYRQGREGTILDTLVQDVYLCASMEFLLTVADIF
LKATQEGFAQVPQHMISPGAGEKKNMNSSVTSKESPAVVSKTEMNVVVRNPEIVFVADLT
RADGPALVMTTECELVMKSGADGSNMTAIIKDLKVVACPFKAEKRKNNVTTVLHPCQVLY
NSSQSPTGPQVMEVSMKALTLKVSPIIINTVITIQTALTPAVEAPVELDSPVPVDLWVKR
GWKELKLWFLDEEGDEDTRSLVPLVPQGESLKVSIESICLTLEAGVGHRTIPMLLAKSSF
NGDVTNWSTLINLHSTLNMEIHYFNEVMGVWEPLLEPLEDETRDGFRSWRLELKMKKKPV
KYTLSDEVDYNVPDYKTVITISSKDQLNLTLTKCGLAMLSNLGMAFAEAAKQTDECFQKD
EAPFVVKNRLGLPVSLSHSEMFRPIGVQGDHCTVELQDGQTLGMDYFTTTDCDQFSAMTS
LSEKDYFIRPTPVGHTSASVIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKCIKIR
SPFLIINHFTIPFKVFEGSTCLGTSLPTVEFCVPLDSYRSELSLQPITEEDTEDQVAQYD
CSEGFSYEDVSNQQPETRIQQTCCLRGNQGGVMTINIVPLKDAVTFKHTGSIGENFDVPF
VLHLWPSFLLHNLLPYPLAYDLLDSGDSAPEATLDPGYSAQLHTAVINQSKLSLRLLNYF
AQDWSSEYSLKSDQEEITFIVFQSLREDDEDYGEGAEKKRAELDIAVHVKYDLGQTVIAI
HSPYWMVNNTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLKNNKIRLMISESEASDD
FSLDTVGSHGDVKCKGRYKDYLVGVKIEANSFSLTRIVSFVPFYMLVNRTKHSIFVCEHG
QENWTEAQPEQSAIPFWPENDTKRVKIKVEGCLSPPRTIDFTRPENCLLLHLDNSMGGII
VDVNLSDHAAIIRFSEYHDGAAPFLIINHTTDQTLQFHQRCLRETSWVPDEVLDLSSSME
EDSSQKSTEQEELEPGRAVHYTWAEPTGSRELCWTCGTYSGKLKSEEDLREDMNNDGKLF
VISFYEGLQRVMLFTEERRIFKLLCESEKAQLAEQEIILSLKNMGVSLVNNSSSQEVSFI
GITSSDVVWEMKPKKKSRWKTLSTKEAEMLEDKYKVYIESAPVDHAIVDLPNNFQVSLTP
NGMDMRMLQPCDAPLRRHFLPGVKVEYSVSPRQRAYRVQIHRIQIQNQLPGAIFPYVFYP
VKLPKSVTMDAEPKPLTDISIVTRTAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDMF
TPEDASTMTLQQEVELFEKDIEYIKTDLNNVAAADTSAISLYEYFHISPIKLHLSISLST
GGDDGMKLKRDTEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWEV
IRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMAL
GVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPSGLREGLTRGG
KGLVSGFLSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGI
KRAAETSQDIQSLRPPRFIHEDGVIRPYKEREGLGSQMLQKIENGRFAKYRYFAHAKVND
CDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKDPTIVEDRRLRIEAKERVKSVFHAK
EFGKIINFRTPEIATWVLTKLEDARDSLPNY
NT seq
9816 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtggacgtcctcaatcggttcctaggggactacgtcgtc
aacctcgacagctcgcagctcaaactcggcatatgggggggtgatgctgttctgagaaat
cttgaaataaaggagaatgccttgagcgagcttgacataccgtttaaagttcgagccggc
catataggacggctggagcttaagatcccatggaagaacctctacactcagtcagtggag
gccactctggacggcgtctatctgctcatagtccccacagcaagtataaagtatgatgca
gaaaaggaggggaagcagctacaggaggctcgacagagggagctaaacaggatagaggaa
acaaagcagaaggctgctgagcaagaaaaccccatgttagagaagcaggacaccttcgtg
gaaaaaatggtcactcaggtcatcaaaaacctgacggtcaagatctctaacatccacgta
cggtatgaggatgacgtcaccaattcaaactgtcctctgtcatttggtgtgtcacttaaa
aacctcagccttcagacggctgataagaactggaatccaagtcttttggatgagaattcc
aagcttttcttcaagttgattcaactagacagcttgtttgcctactggaatgttaactca
acactcttctccaatcacactgcagaggaggccttgcaaagactacagagcagcatggaa
atccagagccatgctcctgtcagccatgacttcatttttcgtcccatctcagcggatgct
aaactacggatgaatcccaggtcagacctggacttcacctatcctaagttggacttgatt
gtcaatctcagtgaggtggccattgagctcaacagatcacagtacattagcatcttggag
ttactgggctcagtggatctgatgtcccggaacctgccgtacaggaagtacagacctgag
cttgatgttttaaagaacgcccacatctggtggaagtatgtgatcacaagcgtcctggag
gtagatgtgaagcctcgacttcgcatgtggtcatggcagcacattcgctgtcaccgaaac
atggtcaaacgatacagagagctctacaagacaaagatcaccagcaagaaacccagcgag
gagctgctcaaacagctagaggagcttgagaaaaccttggatatttttaacatcacgctg
gccagacagcaggcggaaatggaggcaagcagactaggcctgcgtatttaccgtccaggg
ctgaagatggaggaggaggagtctcagggttggcttggctggatgtggaattggggcggc
gaggctgatgcacaagaaaaagatgtcaagtctggaggttttgatgagctgttaacccct
gccgaaaaagccaaactctacactgccattggatacagtgagattgccactaatcccaac
ctgccaaagaattttgaggacatgaaggtcaacttccacatggagaagctgtctttgtcc
atcaaagactacaaggacagaaatgagatcctcagactgactgtgggagagctccattcc
acactcgcacagagatctggagcacaagccatcaaaatctcagcccagctcagtttgttt
gaggtcactggcctggccagtaaccggcctgcaccaaccctcctttcatcaaggaaggca
gcaacaggaatagggaccccgcttctctgtttcctgtttgaaaccaaccccctggataag
accgctgaccagcggcttcatgtagaatcacagcccctggaaatcatctatgatgcaata
accgtgaacagcatgtcagcgttcttcatgcctcctgacgacctgcagctggatgagctc
actaacgccaccctgatgaaactggagcagtttagagatcgcacagccactggtctcatg
tatgtgatcgaaacacagaagattctcgacctgaatatgaacttgatggcctcttacgtc
atcattccacaaacaggcttttacaacggcacccagaacatcatgctgttggatcttggt
catttcaagatgtcgagtcaaagcagggaccatctacctcagctgtccgtgtgctccagc
aacattgaagacatcatgtccagagcatacgacagctttgacatacaactcagtagcctg
cagttactttatagcaaaccagatggggactggaaaaaggcccgtaagcagaaacggtca
ccgcttcacatcctagaacctgtggatctaacaatggctttcagcagggcgatggttgtc
aaagactaccgcatggcaaagtataagatgtctggagagcttcctctgctgtctctttgt
atttctgatgttaaactgcgaagtgttctggagctgcttgaaagtatcccactacctgag
agcagacctgctgggcgcagcactggtgcgcccagcacaccaaagccaaagccgttgtac
acacccaagctcactcccagaagacctctgaacttagctgaccagcgctcctcactcatc
tttgagtcatgtgaaaccatcagcatctcgtctttggggtcagaggaagatttgttctac
gatgctcccagctctcccattggcgataaagcgttcttctcagacaatcccatgccgctg
cgctatgcagccttaaacaaaagaaaaagtctgttcaaggacgacgctccgaagaatatg
acaaacttcatcctaaagtttgatattagtgagttctccattcagttgcgccgcctgtct
ggtgatcaggaggtcacggtgctccatttggacatagatggtctgggcactgagctgaaa
ctgtgcacctttgacatgacatccaatacataccttcgagagatctgcctcaagtgtcct
gaatatatggattctgaagatgagcaagttcagctgataaccactctggacaacactgag
gtggacttgctcaccgtggagtatatcaaagctgacaaaaatggtcctgagttcaagtct
gtacacaataatacagagcagctcatcaaggggacgttttcatcccttgatgttcatcta
catacggaggctctactcaataccatgaacttcctcaacaacctcctgcctccgactacg
aagaaggaggagctacccatcatcacagaggaagatgaggtagaagtagagaaggaggga
gagaagaaggaggaagctactgtcgccaagaaaaaaaatccaaagaagtcaaagtttgca
gatgtcgtgaatcttcatatcaaagctgatctccgctgtctaaaagttttcatcagagga
cagaacaccagaatctctgagattagtatcgagggtctggtttcggaggttaagatgagg
aagaaggagatggagattctggccaacctgaagagcattgtgatcctagactgtgacaaa
gattccttttacaaaaaggctgtgtctatagcagacgaggaagtgtttgccttccacatg
gtgaactacacagatgcgacagaaggggatgcgtatttggacatgtctaaagttgacctc
tctgtttcactggctgtgggatgcatccaggtcatcttcctcaacaagtttgtctcttcc
atattggcattcatcaataacttccaggaggccaaagaggccctggctgaggtgacggcc
caggctgcaggaaaggcagcactgggtgtgaaggggctggcagagcgaagcattcggatc
gctctgaacgtccacttcaatgcacctgtcatcttcgtcccccagtcctcctcttccacc
aatgtcatcgtagctgatcttggtctgctgtctgtcaagaaccgtttttccaagcagcca
tttaaaagtgatgctaatatccctcctgtcgtggatattatgactgtgaggctgactgat
ctcaagatgtacaggaccacatacgtcaatgaagggtttgagggagaaactcaactgctg
aagccagtcagcatgaacttggaagtccagagaaatctttcatccaactggtaccacagc
atacctgacatagggatcactgctcatctaaagccaatgagtctgatcctcagccaggat
gacatgaccgtggtcctaaggactctgagtgagaacctgtcagagaagtcagatgctgtt
ccaccatcgatctctccacccaccactgacccctcctccgattctacatccaacaaagag
tcccagtgctctggcaccactggacaagccagcaataacatggtggtgacagccgctgtt
gtggagacccagaaaaacagcaagctgaagagcacactcaagctggacttcaagtttgac
tccatgacgctggtggtgtttagccctaatgggaatgagttacagctgttggactcgcac
gatgaagagctgaagctcgcagaattcagcctggacaccatctccacctccgttcacatg
ttctccgacagctccatgaaagcctcagtccgtctcgctgcctgccttcttgatgacaag
agaccccaaatcaagatggttacttcaagaatgatggcgatgcgtccgggtgcagaacag
aacatgatggtggaggtgaactatcgtcaaggccgtgaaggcaccatattggacacgttg
gttcaggacgtgtacttgtgtgccagcatggagttcctgctcactgtggcagatatcttt
ctcaaggccacccaggagggttttgctcaagtgccccaacacatgatcagccctggagca
ggagaaaaaaagaatatgaactcttctgtcacttctaaagagtcccctgccgtggtgtca
aagacggagatgaacgttgtggtgcgaaacccggagattgtgtttgtggctgacctgacg
cgtgctgacggccccgccctggtgatgaccacggagtgcgaactggttatgaaaagtggt
gcagacggatccaatatgactgctatcataaaggacctcaaggtggtggcgtgtcctttc
aaggctgagaagaggaagaacaatgtgacaacagtgctgcacccgtgccaagttttatat
aatagttctcagtctccaaccggcccccaggtgatggaggtctccatgaaggctctcaca
ctgaaggtctctccaatcatcatcaacacagttatcaccatccagacggcactgactccc
gcagtggaagcccctgtggagctggatagtcctgttcctgttgacctgtgggtgaaacga
ggctggaaggagctcaagctctggttcctagacgaggagggggacgaagacacaaggtca
ctggtcccactggtaccacagggagagtcattaaaggtctccatcgaatcaatctgtctc
actctggaagctggcgtgggacatcgcaccatccccatgctcctggccaagtcgtccttc
aatggagacgttaccaactggtccactctcattaacctgcacagcacgctcaacatggag
attcactatttcaatgaagtgatgggagtgtgggaaccgctactggagcctttagaagat
gagacaagagatggattcagatcatggagacttgaactgaagatgaagaagaagccagtg
aagtacacactatcagatgaagtggattacaatgttccagactataagacagtcatcacc
atcagtagtaaagaccagctcaacctcacgctcactaagtgtggactggcaatgctgagc
aacctggggatggcatttgcagaagctgccaaacagacagatgagtgcttccagaaggat
gaagccccgtttgtggtaaaaaaccgcctgggcctgccggtgtcactcagccacagtgag
atgtttcgccccatcggcgtgcagggtgatcactgcacagtggagctgcaggatggacaa
acacttgggatggactatttcaccacaacagactgtgaccagttctcagccatgacctcc
ctgagtgaaaaggactatttcatacgacctactccagtgggccacacctcagccagtgtg
atccccctgatcaaagtgggcagaggaatgtacagtgtaatgcacaaagattctggagtc
actcgtttcctggtctgtcaaatttactctgtggagggaagcaagtgtataaagatccgt
tcgcctttcctgattatcaatcatttcacaataccattcaaagtgtttgaaggatcaaca
tgtctgggtacttctctgcctactgtagagttctgtgtgcctctggactcgtataggtcc
gagctgagccttcagccgataacggaggaggacactgaagatcaggttgcgcagtatgac
tgctcagagggcttcagctatgaggatgtcagcaaccagcagcctgagacacgcatccag
cagacctgctgtctgcgtggaaaccagggtggtgtgatgacgatcaacattgtgccatta
aaggatgctgtgacattcaaacacacaggtagtatcggggagaactttgacgtgcccttc
gtgctccacctgtggccttccttcctcctgcacaacctgctgccttatcccctcgcctac
gacctgctggacagtggagattctgctcctgaagccactctggacccaggctactctgcc
cagcttcacaccgccgtcatcaaccagtcgaaactcagtctccgcctgctgaactacttt
gctcaggattggtcctctgagtacagtctcaagagtgaccaggaggagatcaccttcatc
gtgttccagtcgctacgagaggatgacgaggattatggtgaaggggccgagaagaagagg
gcggagttagacatagcggtgcatgttaaatatgacctggggcagacagtgattgccatc
cactcaccgtattggatggtgaacaatacgggaaggttactgcagtacaaggctgatgac
atccaccgtaaacaccccctggactacgacatgccactgctcttctcattcaagcctcgg
tacttcctgaaaaacaataagatccgccttatgatctcagagagcgaagcgtctgatgat
ttctccctggatacagttggtagccatggggatgtgaaatgtaaaggcagatacaaagat
tacctggttggtgtgaagatcgaagcgaacagtttcagtctcacacgcatcgtgagcttt
gtgcccttttacatgctggtcaacaggaccaagcacagcatcttcgtatgtgagcatggg
caagaaaactggactgaggctcaaccagagcagtcagccattcctttctggccggagaac
gacaccaagcgggtgaagatcaaagtagaaggttgtttatcgcctcctcggacgatagac
ttcacacgaccagagaactgtctcctgctgcacctggacaactctatgggtgggatcatt
gttgatgtgaacctatcagaccacgcagccataatccgtttctcagagtatcacgatggc
gcggcccccttcctgatcatcaaccacaccacagaccagactcttcagtttcatcagaga
tgcctgagagaaacctcctgggtgcctgacgaggtgctagatctctcctcctcaatggag
gaggacagctctcagaaaagcacagaacaggaggagctggagcctgggagagctgtgcac
tacacctgggccgaacccaccgggtcccgggagctttgctggacgtgtggcacctacagt
gggaagctgaagagtgaggaggatctgcgtgaggacatgaacaacgatgggaaactgttt
gtgatctccttctatgaaggtctccagcgtgttatgctgttcacggaggaacgacgcatc
ttcaagctgctctgtgagagtgagaaggcgcagctggccgaacaggaaatcatcctgtcg
ctgaagaacatgggcgtgtctctggtcaacaacagcagcagccaggaggtctccttcatt
gggatcacgagctctgacgttgtgtgggagatgaagccaaagaaaaaaagtcggtggaag
actctaagcactaaagaagctgagatgttggaggacaaatataaagtttacattgaatct
gctcctgtagaccatgccatcgtcgacctgccaaacaacttccaggtgtccttgactccc
aatggcatggacatgcggatgctgcagccgtgtgacgctcccctcaggaggcacttcctg
cctggggtgaaggtggagtacagcgtctcgccacgacagagagcctaccgagtccaaatc
caccgcatacagattcagaatcagctgccaggagccatcttcccctacgttttctaccct
gtaaagctgccaaagtctgtcaccatggatgcagagcccaaacctctgactgatatcagc
attgtgaccagaacagcaggacactcggacatctctcgcatcaagtatttcaaggttctg
attcaagagatggatctgaagctcgatctgggcttcctgtatgccatcctggacatgttc
accccggaggacgccagcaccatgaccttacaacaagaggtggagctgtttgagaaggac
attgagtatatcaagacagatctgaacaatgtggctgctgcagacacttctgccatcagc
ctctacgagtacttccacatttctcccatcaagctgcacctgagtatctctctgagcaca
ggaggagacgacgggatgaagttgaagagagatacagaaatcatcccggtccagtccctc
aacctgctgctgaagagcatcggagcaacgctcaccgacgtgcaagatgtggtcttcaag
ctggccttctttgagttgaccttccagttctgcaccactcagcagctacagtgggaagtc
atcaggcattattccaagcaggctattaaacagatgtatgtgttagtactgggcctggat
gtgcttggaaacccctttggactgatcagaggtctgtcagagggagtggaggccttcttc
tacgagccctatcagggagccatccaggggccagaagagtttgtggaaggaatggctctt
ggggtgaaggctctggtgggaggagccgtagggggtatagcaggggcagcctccaggata
acaggtgccatggcaaagggcgtcgccgccataacgatggatgaggactaccagcagaag
agacgagaagctatgaacaaacaacctagtggcctgagagaagggctgacccggggtgga
aaaggactggtgtctgggtttttgagtgggatcacagggatcgttaccaaaccaattaaa
ggagctcagaaggagggtgcagccggcttctttaaaggtgttgggaaaggtctggtcggc
gcagtagccagacccacaggaggcattatcgacatggccagcagcacgtttcaagggatc
aagagggcggcagagacctcacaagacattcagtctctacgtcctcctcgcttcatccac
gaagatggtgtcatacgcccatataaggagagggaaggcctcggcagtcagatgctccag
aaaattgagaacggacgttttgccaagtacagatactttgctcatgccaaggtcaatgat
tgtgatttcctcatgatcaccaagaggggaatattctttgtgaccaaaggaacattcggt
cagctgacctgtgaatggcagtatctgtttgaagagttcaccaaggacccgacgatagta
gaggaccggcgactacgcattgaagccaaggagagagtaaaatccgtcttccatgccaaa
gagtttgggaagatcataaacttcagaactcctgagatagccacgtgggttctaaccaaa
ctggaggacgcacgagacagtttacccaactactga
DBGET
integrated database retrieval system
