Pleuronectes platessa (European plaice): 128438245
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Entry
128438245 CDS
T09923
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128438245 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128438245 (skic3)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128438245 (skic3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_19
TPR_14
TPR_8
TPR_17
TPR_11
TPR_12
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
TTC22_N
CABIN1_N
Fis1_TPR_C
TPR_15
TPR_BSK1_C
ARM_TT21_C
TPR_Psidin_N
WHD_RepA_N
COG4_N
Motif
Other DBs
NCBI-GeneID:
128438245
NCBI-ProteinID:
XP_053276715
LinkDB
All DBs
Position
4:14530277..14549908
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKDYKDALRHCKAVLKLEKNNYNAWVFIGLAASELEQPDQSQ
SAYKKAAELEPEQLLAWQGLANLYDKTDQWDFKVELPNIYQKLVDLYASSDKKKCYEVIQ
KLSDIYLSDKEYLKLAKVSLQLIQLKEEEAVDKTELLQLWQEMIQLLSDGINEREQDNET
QQHLITAFENTIVLVEPVPGEKHKTISADFINCLSKLPQEENKLKKACESMLIHYPNQSY
PLEVLCSQYLKTGILNDDTISCFSRLLDLAPDSGLGHLGLGTKALQEGRYTDAIKDLSQG
LKKKSCNTGWHSLAEAQFKVHRYSDSAASCCQGLATCVSGDKELKVKLLTLKLETSVRCG
GEKAADDALDTFSQIPDAVKDQVLVALKGRAYLNKGQIDQALKVSSELVASNPNLDQGLA
LRGLVHSAEGQHQLAEQSFLKAASLSPNCAEYYFLLGQLYWDWGEETRKDRGKAQAHLLK
AAKIDPHLGCVFRYLGHYYREIATDRVRARGCYKKAFELDNEDSESGSASVDLSMEQEDM
DTALATLESVIEKATPGSAKWAWMRRGLYYLKVGEHQQAVSDLQAALRADPDDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFNEAAAEYLQITAQQDY
VPALKGLGECQLSLAKCLMEDCRDGGAIDLIQQAIKNLFRAVELRPGLSCLWKLLGDACT
AVSSVSTNRAQVLVPALLAGLDPNSGSHVLNQAQTLKVGERCYAHALKLTSEAPSLWYDL
GLNYYHQAKLPISSEGDQNSQSQVLEKAQQCFKKAIMMDCENHSYWNGLGVISMNKGLEN
LVLAQHCFIKSIQVEPNNVVAWTNLGTLYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHVEGVKGYAFWVCSTLLDKSNRDSELYRYNIVQMNAI
SAAQVVLCKYTERIQSDPEAFIMLGYLNEHLQLKRQALQAYQRAVELLKSTSSAEELAFA
LGSYGRALCTSGHWDDAVHVYNSTPLQELSDLTGLALAYWRAGLIPESTNAYERALAVAS
SEKEKAYILTALALLQHRQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHGDVTLAA
AALTELLKQGSATGSVVEQRCLLTCTLLALKGNYSAVQREASRAVHSNPGNPSLWALLSR
VIPQYYPRKANGGAVAGHVACLSSMTQGKRALLYSGVNQLASGKHSGEDVHRNALKTMQR
AVLLCPDDPSAWAGLMAACHTENTACYLSGSAPCRQGLEKTLMSVVSEKVRSVEEIERPL
AQSLEGWVLQQAVTGLMLGGQLEQAEALCSQVLSVSPEHPAVMLSLRQVQCQRLLVADGG
NVLLDSVLEQLSNTVMLNRTNLGAWHWLAEVYRRQGLLVQAVMAYRQSLQLALQLGLHSG
QVASLLRLALLALEPCMAGAPGNEWKDLVVEATTEVLKLGSSPVASLFQALLQYVTKMAA
RETRRLLERLVYASSQDLPVTVVQVASWYFLRHLYAKNDPELINVLLQHAKMKGDQRLLE
FNSLLASS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaaagcggagctgaaaagtgccagagaggccattaaaaacaaa
gattacaaagatgctctgagacactgcaaggctgttttgaaactggagaagaacaattat
aatgcctgggtgttcatcggcctggcagccagtgaactggagcaaccagatcagtcccag
tcagcctataagaaggcagcggagctggagcctgagcagctactggcatggcagggctta
gctaatctttatgacaagacggatcagtgggatttcaaagttgagctacccaacatttat
cagaagcttgttgatctatacgccagttcggacaaaaagaaatgttacgaggtgatccaa
aagttgtcagatatttatctgtctgacaaagaatatttaaagctggcaaaggtttcgctg
cagcttattcagctgaaagaggaagaagctgtggacaagacagagttactgcagctgtgg
caggagatgatccagctcctgtcagacggcattaatgagagagagcaggacaatgaaaca
cagcagcatttaatcacagcttttgagaacaccattgttctggtggagcctgtaccagga
gagaaacacaagacgatctcagccgactttattaactgcctctctaaactgccgcaagaa
gaaaacaaattgaaaaaggcttgtgagtccatgctcattcactaccccaaccaaagttac
cctcttgaggtcctttgttctcaatacctcaaaacaggtatcctgaatgatgatacaatt
agctgcttctcccggctcctggatctggcccctgactctgggttgggtcacttgggtctg
ggcactaaagcacttcaggaaggaagatatacagacgccataaaggacctttcacaaggg
ttgaagaagaagagctgtaacacaggatggcacagtctggctgaagctcagtttaaagta
cacagatactcggacagtgctgcttcatgctgccaaggtctggcgacgtgtgtttctgga
gacaaggagctgaaggtcaaactgctgacgttgaaactggagacttctgtcagatgtgga
ggagagaaggctgcagatgatgctttggacaccttttcacaaattccagatgctgtaaaa
gaccaagttctcgttgcccttaaaggacgtgcatacctgaacaaaggacagattgatcaa
gcacttaaggtatcatcagagcttgtggcctccaacccaaacctggaccagggtttagct
ctgagaggactggtgcattcagctgaaggtcagcatcagctggcagagcagagtttcctg
aaggcagcttccctgagcccaaactgtgcagagtactattttttgctgggacaactctac
tgggactggggagaagagacccgaaaagacagaggcaaagctcaagcacacttgctaaag
gcagcaaagatagatccacacctcggctgtgtttttcgctaccttgggcattactacagg
gagatagctaccgatcgtgttcgtgcacgaggctgttataagaaggcctttgagttggac
aatgaggattctgagtctggaagtgcctcagtggatctcagtatggagcaggaggatatg
gacactgccttagcaacactggagtcagtgatcgagaaagccactcccggttcagctaaa
tgggcctggatgagacgaggcctttactacctgaaggtcggggagcatcaacaggccgtc
tctgatcttcaggcagctctgagagcagacccagacgactgggtgtgctgggagtgttta
ggcgaggcctacctaaaccgccggagcttcacggctgcgctgaaggcctttggtaaggcc
catcaacttcagccctcctccatctacagtgtttaccaggctgctgcgatcaaacagacc
ctgggcaagtttaatgaggcggccgcagagtacttacagatcacagcacagcaggactat
gttcctgctcttaaaggacttggggagtgccagctgtctctggcaaaatgtttgatggag
gactgcagagatgggggagccattgacctcattcagcaagctattaagaacctcttcaga
gccgtggagctgcgtccaggcctgtcctgcttgtggaagctgctgggagatgcctgcact
gcagtcagcagtgtttcaacaaacagagcacaagttcttgtgcccgccctgttggctggt
ttagaccccaactcagggagccacgtgctgaaccaggcccagacactcaaggtcggcgag
aggtgctatgctcatgctttgaagctgacgtctgaagcccccagcctttggtatgactta
ggactcaactattatcaccaggctaaactgccaatttcttcagaaggagatcagaactcc
caatctcaggtcctagagaaagcccagcagtgttttaagaaggccatcatgatggactgt
gagaaccatagctactggaatggcctgggggtgatttccatgaacaaaggtcttgagaac
cttgttctggctcaacattgcttcatcaagtccatacaagttgagccaaataatgtggtt
gcctggacaaaccttgggaccctctatttgaagaaggacaatatagagctcgcacacgag
gccttcaagattgctcagtccttggagccgctatatgtcaactgctggattggacaggcg
ctgatagcagagagagtgggaagctacgacaccatggatcttttcaggcacaccactgaa
ctcagtacacatgtggagggagttaaaggttatgccttctgggtatgttccaccttgcta
gataagagcaacagagactctgaactgtaccgctacaacatagtccagatgaacgccatc
tctgctgctcaggtggttctctgcaagtacacagagaggatccagtctgaccccgaagcc
ttcattatgctgggatatctgaatgagcatctgcagctgaagagacaggccttacaggct
taccaaagagctgttgaactgctgaagtccacgtcctctgcagaagaactggcttttgct
ctgggcagctatggccgcgctctgtgcacctcaggccactgggatgatgcggtgcatgtt
tataattccactccactgcaggagctcagcgatctgactgggttggctctggcctactgg
agagcaggactcattccagagagcaccaacgcatatgagcgtgccttggctgtggcgtcc
agtgagaaggagaaagcttacatcctgacagctctggccctgctgcagcaccggcagggc
aacctggactcagccaagactctgctgtttaaatgctcaatgttaaaggagcccatctcc
gagtctctgctgtgtttatgtgccctcgggttggtccacggtgatgttacactagctgct
gccgccctgaccgagctgctgaagcaaggttcagccactgggagtgttgtagagcagcgg
tgtttactcacctgcaccttgctggccctgaagggcaactacagtgcagtgcaaagagag
gcctccagagctgtacacagcaatcctggaaacccctccctgtgggcgctgctgtccaga
gtgataccacaatactatcccaggaaggcaaatggcggagcagtggctggtcacgttgcc
tgtctctccagtatgacccaaggaaagagggcgctgttgtacagtggggtgaaccagctg
gctagcggaaaacactcaggagaggacgttcacaggaatgcgctgaagactatgcagaga
gctgtgctgctgtgtcccgatgatccatcagcatgggcgggattaatggctgcctgtcac
acagaaaacacagcctgctatctctcaggttctgctccttgcagacaagggctggagaaa
accctcatgtcagtggtttctgagaaagtgcgtagtgtggaggagatagagcgccctcta
gcccagtctctggagggatgggtacttcaacaggcagtgactggtctcatgttaggggga
cagctggagcaggcagaagccctctgctcacaggtcctaagtgtttcaccagaacatcca
gcagtgatgctgtcactgagacaggtgcagtgtcagcgcctccttgtggccgatggtggt
aatgtcctcctagactcagttctggagcagcttagcaacacggtgatgttgaaccgcacc
aacctcggggcatggcattggctggctgaggtgtatcgtaggcagggtctgctggtgcag
gcggttatggcttataggcagagtctgcagcttgccttacagctcggcctgcacagcggc
caggtggccagcctcctccgattggccctgctagctctagaaccctgtatggcaggggcc
ccaggaaacgagtggaaggacctggtagtagaagccacgactgaggttttgaagctgggc
tcatcccctgtggctagcctcttccaggccctgctccagtatgtgaccaagatggcagct
agggaaacgagacggttgctggagaggctggtgtacgcttcctctcaagacctcccagtg
acggtggtgcaggtggccagctggtactttctcagacacttgtatgccaaaaatgacccg
gagctgattaatgtgctcttgcaacatgccaaaatgaagggagatcagagactgttggaa
ttcaattcactcctggcctcgtcctga
DBGET
integrated database retrieval system
