Pleuronectes platessa (European plaice): 128439019
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Entry
128439019 CDS
T09923
Symbol
tncb
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04510
Focal adhesion
pplt04512
ECM-receptor interaction
pplt04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128439019 (tncb)
04518 Integrin signaling
128439019 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128439019 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128439019 (tncb)
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128439019 (tncb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
DUF7949
Fn3_Dep-1_2nd
EGF
FN3_Tor_3rd
hEGF
Motif
Other DBs
NCBI-GeneID:
128439019
NCBI-ProteinID:
XP_053277797
LinkDB
All DBs
Position
4:5442655..5488599
Genome browser
AA seq
1692 aa
AA seq
DB search
MWMKGFVLGCMTVALLIQLSTGGLVKVIRHRRETLMPKKTQENLTLPHPDQPVVFNHVYN
INVPSVSLCSVDLDTPVGPELKQKPNPMDMQNSEHMEHTVDGDNQIVFTHRINIPKQACG
CNNQLPDIKDILNRLEMLESELSSLREHCSSGAGCCGAQVTGEVSTKPYCNGRGNWSTET
CSCTCEPGWKGHNCTEPECPNDCQDQGRCVDGKCECFEGFGGDDCVIELCLMDCGDYGHC
IDGSCLCEEGFLGLDCTQTNCLNNCLGRGRCVEDECVCDEPWTGFDCSELICPNDCYDRG
RCINGTCYCDQGFTGEDCGNLTCPGNCNNRGACVNGECVCQTGYSGEDCSKLTCPANCNE
RGHCFNGKCICDPGFEGEDCSILSCPDNCSNRGRCINGECACDLGYQGEDCSELSCRNNC
QDRGRCIDGQCICNKGYSGEDCSIKTCPKDCMGRGECIDGKCQCFAGFKGKDCGELTCPN
DCLDRGRCVNGQCVCHKGFAGEDCSEKTCPKNCLERGYCVDGNCVCYEGFTGLDCSTLTC
TGDCQNQGRCENGVCICDEGFIGEDCSEVSPAKDLKVIEVTPETVDLSWENEMRVTEYLI
TYAPTAAGGLELDMRVPGDQKLATIRELEPGIEYLISVFAVLGNKRSVPVSARVATHLPE
PEGLKFKSVRESSVEVQWDPLDIPFDGWNIIFRNTKEEDGEILNSLGRPETTFEQSGLGP
GQEYEVKLEVVKNNKRGPPSSKNVVTRIDAPSQVNVRDVTETTALVTWFQPVAHVDGISI
SYGPSSNPADRSIVELTSTDTQYHLGGLLPDTQYEVSLTARMGERTSIPVYETFLTDLDA
PRDLQMVELTDQSITLEWKNSQAQVENYRIKYGPLSGGDHGEMLFPPGPKETTQAKITGL
RPGTEYGMGVTAVKDERESLPTTTNAVTALDAPKDLTVTEVTETTIMLEWKRPLAKLDSY
RLVHVSADGHRAEEVLPGSSESHTLRGLTPGMLYTISIIAERGRRTSAPATISAPTEEEK
PVVTNVTVSDVSWESFLLSWSAEDGKFEAFLIEVTDAETGAEWKNHTVSADARSLAISGL
SPATWYRANLYGVYRGTLLDPVFADTITEDEPEVQALLVSDVALDSFKLAWMAEEDAFDT
FVIMVSQAEGSDQPRELVLGGEERSAAMTELTEDTKYKIEIFGLVLGRRSKSVFEGVRTD
LGSPKGIRFSDVTDTSATVHWAVPRARVDSYRVTYVPAHGGNAKTLTVDNSESHTVLPNL
TPGVTYEVTVVAVKGQRESEPGSDSVTTALDKPRGLTAINITDTEALLLWQPAIATVDGY
VITYSADSVAPVMERVSGNVVEFEMSSLTPATHYTVKVYAVRDLSKSAATTTEFTTDVDA
PQDLAASNIQTENCMLTWKPPRADITGYILSYESTDGIIREVVLSPTAVSYNMAQLSAST
EYSIRLQAIAGPKRSRVISSVFTTTGVLYRYPRDCSQALLNGDTSSGLYTIYLAGDESQP
IQVYCDMSTDGGGWIIFLRRQSGKLEFFRNWKNYTGGFGDMNDEFWLGLSNLHKITAGGQ
YELRVDLRDKGEAAYAQYDKFSVSEPRSRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDN
DIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFADMKIRPS
NFRNLEGRRKRS
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgtggatgaaaggcttcgttttaggctgcatgactgtggcactgctgattcagctttcc
acgggcggcctggtgaaggtcatccgccaccgccgggagactctgatgcccaagaaaacg
caggagaacctcactctgccccaccctgaccagcccgtggtgttcaaccacgtctacaac
atcaacgtcccctccgtgtccctctgctcagtggatcttgacacgcccgtaggcccagag
ctcaaacaaaagccaaacccaatggacatgcagaacagcgagcacatggagcatactgtg
gatggcgacaatcagattgttttcacccaccgcattaatatccccaagcaggcatgcggt
tgcaacaaccagctgccagacatcaaggatattctgaacaggctggagatgcttgagtca
gagctgtctagtctgagggagcattgcagcagcggggcaggatgctgtggagctcaagtt
acaggtgaagtatccacaaagccctactgtaatggccgtgggaactggagcactgaaact
tgcagttgcacatgtgagcccggatggaagggtcacaactgcaccgaacctgagtgcccc
aacgactgccaggaccagggccgatgtgtggacggaaaatgtgaatgctttgagggcttt
ggtggggatgactgtgttattgagctctgcctaatggactgcggtgactacggccactgt
attgacggctcctgcctatgtgaggagggcttccttggtttggactgcacccagaccaac
tgccttaacaactgtctgggccgtggacgctgcgtagaggatgagtgtgtttgcgatgag
ccatggacgggcttcgactgctccgaactcatctgtccaaatgactgctatgaccgcgga
cggtgcattaacggcacctgctactgtgaccagggcttcactggtgaagactgcggcaat
ctcacctgtccaggcaactgtaacaatcgtggcgcatgtgtgaatggcgagtgtgtgtgc
cagactggctacagtggagaagactgctcaaagctcacttgtcccgcaaattgcaacgag
agaggccattgtttcaatgggaaatgcatctgtgatccaggatttgagggtgaggattgc
tcgattctttcatgccctgacaactgtagcaacaggggaaggtgcattaatggagaatgt
gcatgtgacttgggataccaaggtgaggactgtagcgagctgtcgtgccgcaacaattgc
caagaccggggtcgttgcattgatggacagtgcatatgtaacaagggatactctggggag
gactgcagtatcaagacctgtccaaaagactgcatgggacgtggagaatgcattgacggc
aagtgtcaatgcttcgctggcttcaaaggtaaagactgcggtgagctgacctgcccgaat
gactgcctggaccgtggtcgctgcgtgaacggacaatgcgtttgtcataaaggtttcgct
ggtgaggactgcagtgagaagacgtgtcccaagaactgtcttgaaagaggttactgtgtg
gatggcaactgtgtgtgttacgagggtttcactggcctggactgctccacactgacctgt
accggagactgtcagaaccagggacgctgtgagaacggagtctgtatctgtgatgagggc
ttcattggagaggactgctctgaggtctcaccagccaaggaccttaaagtgatagaggtc
acccctgagacagtggacctatcctgggaaaatgagatgcgtgttaccgagtacctgatc
acctacgcgcccacagcagcaggaggcctggagctagacatgcgtgtgcctggggatcag
aagttggccaccattcgggagctcgaacctggcattgagtacctgatcagtgtctttgct
gttcttggcaacaagaggagtgttcctgtcagtgcaagggtggccacacatctgcctgag
cctgaaggactcaagttcaagtcagttcgggagtcgtcagtggaggtacagtgggaccca
ctggacattccctttgacggatggaacatcattttcaggaacacaaaagaggaggatggt
gagattcttaactcccttggccgtccagagaccacctttgagcagtcgggcctgggccct
ggccaggagtacgaggtcaaactggaggtggtgaagaacaacaagcgtggaccgccttcc
tctaagaacgtcgtcacaaggattgatgcccctagtcaggtgaacgtacgtgatgtgaca
gagaccacagcgctggtgacctggttccagcctgtagcccatgtggatggcatcagcatc
tcctacgggcctagttctaaccctgctgaccgcagcatagtagagctgacctccactgac
acacagtaccacctgggtggcctcctccccgacacccagtacgaggtgtctctgacagct
cggatgggagaaaggaccagtattcctgtttatgaaacttttctcacagacctggacgcc
cccagagacctgcagatggtggagctgacagaccaaagtattacccttgagtggaagaac
agtcaagctcaggtggagaactatcgcatcaagtacggacctctgtctggaggcgatcac
ggagagatgctctttcctccaggacccaaagaaaccacccaggccaagatcacaggcctg
agacctggcacggagtacgggatgggtgtcacagcggtgaaggatgagcgggagagtctg
cccacgaccaccaatgcagtgactgccctggatgctcccaaggacctgactgtgacggag
gtgacagagaccactattatgctggagtggaagcgcccgctggccaaactcgactcctac
agactggtccatgtctccgctgatggccacagggctgaggaggtgctcccaggcagctct
gagtctcacaccctgaggggcctgacacctggcatgctctacaccatcagtatcattgct
gagcgcggccgcaggaccagtgctccggcaaccatctctgcgcccacagaggaggagaag
cctgtggtgaccaatgtcactgtcagcgatgtgtcatgggaaagcttcctcctgtcctgg
tctgctgaggatgggaagtttgaggcctttctgatcgaggttactgatgcagaaacgggt
gctgagtggaaaaaccacacggtgtctgctgatgctcgcagcctcgccatctctggcctc
tcccctgccacctggtacagggccaatctgtacggggtatacagggggaccctcttagat
cctgtttttgcagacaccatcacagaggacgagccggaggtgcaggctctcctagtgtcc
gacgtcgccctcgacagctttaaactggcctggatggctgaagaggatgccttcgacacc
tttgtcataatggtcagccaggctgagggctcagaccaaccaagagaactggtgttgggc
ggtgaagagcgaagcgctgcaatgactgagctcactgaggacacaaagtacaaaattgaa
atctttggccttgttctgggaagacgctccaagtctgtattcgagggggtgagaacagat
ctgggctcacccaagggcatccgcttctctgatgtcaccgacacatccgccaccgttcac
tgggcagttccaagagctcgggtggacagctacagggtcacatatgtgcctgctcatgga
ggtaatgctaagacgcttacagtggataactccgagtctcacactgtgcttcccaacctg
acacccggggtcacctatgaggtcactgttgttgctgtcaagggtcagagggagagtgag
cctgggtcagacagtgtcaccacagctctggacaagccccgtggtctgactgccatcaat
atcacagacactgaagctctgctgctctggcagcccgccatcgccactgtagacggatat
gtcattacctacagtgcagactcagtggctccagtgatggagcgcgtgtcaggaaacgtg
gtggagtttgagatgagctctctgacgccagcgacgcactacactgtgaaggtgtatgcg
gtgagggacttgtccaagagcgcagccactacgactgagtttaccactgatgtggatgct
cctcaggatctggcagccagtaacatccagacagagaactgcatgctgacctggaagccg
ccccgcgctgacatcaccggatacatcctcagctacgagtccacagacggcatcatccgg
gaggtggtcctgagtcccactgctgtatcatacaacatggctcagctcagcgcctccaca
gagtattcgatcaggctgcaggccatcgctggtccaaagaggagccgagtcatctcctct
gtcttcaccacaactggtgtgctgtacagataccccagggactgctcccaggctctgctg
aacggtgacacctcttccggcctgtacaccatctatctggcgggagatgagagccagcct
atccaggtctactgtgacatgagcaccgatggaggcggatggattattttcctcagacgt
cagagcgggaaactggagtttttccgtaactggaagaattacacgggcggctttggtgac
atgaacgatgaattctggctgggtctgtccaacctacataagatcacagctggaggtcag
tacgagctgcgggtggacctgagagacaagggtgaagcagcctacgctcagtacgacaag
ttctctgtgtctgaacctcgaagccgctacaaggtccatgtaggaggatacagtggaaca
gcaggcgactccatgacctaccaccacggccgtccattctccacctacgaccatgacaat
gacattgctgtcaccaactgtgccctgtcctataagggagccttctggtataaaaactgt
caccgtgtcaacctcatgggacgatatggagataacagccacagcaagggtgtgaactgg
ttccactggaaaggccacgagcactcgatcgagtttgcggatatgaagatcaggccctcc
aacttcaggaacctggaggggaggaggaaacgatcataa
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