Pleuronectes platessa (European plaice): 128439999
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Entry
128439999 CDS
T09923
Symbol
rpa1
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03030
DNA replication
pplt03420
Nucleotide excision repair
pplt03430
Mismatch repair
pplt03440
Homologous recombination
pplt03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128439999 (rpa1)
03420 Nucleotide excision repair
128439999 (rpa1)
03430 Mismatch repair
128439999 (rpa1)
03440 Homologous recombination
128439999 (rpa1)
03460 Fanconi anemia pathway
128439999 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pplt03000
]
128439999 (rpa1)
03032 DNA replication proteins [BR:
pplt03032
]
128439999 (rpa1)
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128439999 (rpa1)
Transcription factors [BR:
pplt03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128439999 (rpa1)
DNA replication proteins [BR:
pplt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128439999 (rpa1)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128439999 (rpa1)
MMR (mismatch excision repair)
128439999 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
128439999 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
IBR
Motif
Other DBs
NCBI-GeneID:
128439999
NCBI-ProteinID:
XP_053278531
LinkDB
All DBs
Position
5:7845047..7868966
Genome browser
AA seq
601 aa
AA seq
DB search
MTQLTEGAIEILSNGSGVNDAVLQLVNIRKIEGGSGPARFRVMMSDGLHTLSSFMLSTQL
NCMAEDNQLAPNCICILKRHVTNNLKDGRRVVIILEIEVIKSADEVDGKIGDPTPYTEGN
AKVQQAAPNIEPRAPLLQQNRNEAMNRGSNRDFGKKAPSAVPSTPGGSSKIVPIASLNPY
QSKWTIRARVTNKGSIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFYTLAEVGK
VYYISKASLKIANKQYTSVKNDYEMTLNGESSLIPCEDSGDVPMVQCEFVSIGDLESKEK
DAVVDVIGVCKKVDEVTRLTTKSNKEVSKRTLDLMDMSAKLVTVTLWGEEAEKFDGSGQP
VVAIKGAKVSDYGGRSLSASFSSTVMINPDIPEAYKLRGWYDKEGHAVDGQSLTEAKGGG
GGNTQLEDTSSDVKTEHLGHGDKADYYTCIATIVYLRKENCMYQACPTQDCNKKVVDQQN
GMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNE
TAFDEIFQQANFHTFIFRSRVKLETYNDESRIKATVMEVKPVDHKEYCKRLIMNIRKLAA
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagctcacagaaggagccatagagatcctgtcaaatggctcaggagtgaacgac
gctgtgcttcagttggtgaacattcgcaagatcgaaggtggaagtggtccggctcgcttc
agggtgatgatgagtgatgggctgcacacactgtcctctttcatgctctccacccagctg
aactgcatggccgaggacaaccagctggcccccaactgcatctgtatcctcaagaggcac
gtgaccaataatctcaaggatggacggcgtgtggtgatcattttggaaatcgaagtaatc
aagtctgccgatgaggttgatgggaaaataggagaccctactccatacacagagggtaac
gctaaagtccagcaggcggctccaaacatcgaaccccgtgctccactgctgcaacaaaat
agaaatgaagcaatgaacagaggttccaatagagacttcgggaagaaggccccatctgct
gtgcccagtactccagggggcagctccaaaattgtacccatcgccagcctcaacccgtac
cagtccaagtggaccatccgcgcccgtgtaaccaacaagggcagcatccgaacatggagc
aactctcgcggtgatggcaaactcttctccatggagctcgtggatgagagcggggagata
cgagtgactggtttcaaccaagaggtggacaagttctacaccctggccgaggtcggcaag
gtctactacatctccaaggcctccctgaagatcgccaacaagcagtacacgtcggtgaag
aacgactacgagatgacgctgaacggagagtcctccctcatcccctgcgaggacagcggt
gacgtgcccatggtgcagtgcgagtttgtttccatcggggacctggagagcaaagagaaa
gatgccgtcgtcgatgtgatcggagtgtgcaaaaaagtggacgaggtgacccgcctcacc
acaaagtccaacaaagaggtgtccaagaggacgctcgacctgatggacatgtctgccaag
ctggtgactgtcactctgtggggagaggaagcggagaagtttgatggctctggacaaccc
gtcgtggccattaagggggcgaaggtctccgactatggaggccgctccctctcagcatcc
ttcagcagcaccgtgatgatcaacccagacatccccgaggcgtataaactccgaggctgg
tacgataaggagggccacgccgtggacggacagtctctgacggaggctaaaggtggcggc
ggtggaaacacacaactggaagacacctcctccgacgtgaagaccgagcacctggggcac
ggagacaaggcagactactacacctgcatagccaccattgtgtacctgcgcaaggaaaac
tgcatgtaccaggcctgcccgactcaagactgcaacaagaaagtggtggaccagcagaat
ggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgcctcatc
ctgtcggctaacattgcagattatggagacaaccagtgggtgacctgcttccaggagagt
gcagaggccatcctgggccagaacgcagcttacctggggcagctcaaggactcgaatgaa
actgcctttgatgaaatcttccaacaagccaacttccacacgtttatcttccgcagcaga
gtgaagctagaaacgtataacgatgaatccagaatcaaggccacggtgatggaggtgaag
cccgtcgaccacaaggaatactgcaagaggttgatcatgaacataaggaaactggctgcc
cagtag
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integrated database retrieval system
