Pleuronectes platessa (European plaice): 128440326
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Entry
128440326 CDS
T09923
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04382
Cornified envelope formation
pplt04510
Focal adhesion
pplt04512
ECM-receptor interaction
pplt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128440326 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128440326 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128440326 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128440326 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pplt04147
]
128440326 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128440326 (col4a3)
Exosome [BR:
pplt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128440326 (col4a3)
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128440326 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128440326
NCBI-ProteinID:
XP_053278988
LinkDB
All DBs
Position
5:complement(665942..686838)
Genome browser
AA seq
1677 aa
AA seq
DB search
MRPGLCSCVSGGMEPPGGLRRSVVLLLVLLLCCCGAPEHRVCHCSGKSLCHCDGVKGQKG
EPGNLGELGLPGLIGYPGNEGHQGSPGEKGEHGAAGSPGLKGSRGLSGRPGFPGPPGLPG
LPGHDGPIGQPGFPGCNGTKGDVGYRGAPGVRGPVGFQGQTGLRGTKGDSFVFPVPRDIK
GPTGPPGPEGEKGLRGDLGQLGLAGPPGPAGRPGSPGFPGLQGEKGQEGPSPVIPGPRGR
KGDPGPSGIPGQKGIKLYAEGPKELKGEPGEVGEKGCRGPNGVPGKEGVKGDKGDQGDLG
SLGKPGKDGLVGELGDPGDPGDRGYLGPPGIEGAEGETGDRGLPGFPGEIVWNHIFLKGQ
PGVPGPRGPPGAPGERGILGFPGLEGESGVAPTGPLGPQGTPGFTGQKGETGEPGPLIIG
PPGETGVPGVPGAEGEPGEPGEPDVLPGDVGPPGARGVKGLMGLPGTRGEEGQMGDKGET
CFVCPVVNGSPGPPGRPGEPGEAGVTGVNGSPGPEGDKGVTGVRGPPGPQGPFGFPGYPG
TPGPVGEPGIMHRVGKKGEEGANGVSGQSGLVGTDGAAGVPGPKGVVGQKGNPGPLGQKG
DRGPLGESGPRGLIGQRGPPGPPGIGIPGPPGPKGNVGVLGRRGIPGKQGEKGSPSEIKT
SPGDPGQKGEKGLSGNPGPEGETGPPGDPGFAGPKGEEGDSGFSVQGPPGFPGVKGVKGP
SGDPGLSSFGIKGRAGPSGPPGMPGPKGDKATGFPGQQGQLGPQGDDGSVGSQGEPGPQG
INGVPGPPGQDAPPGPNGRCGLDGEPGPFGFVGPCKEGAPGPDGEEGQMGVIGFTGARGT
KGLEGDPGLPGVGSLGPRGANGAPGFDGPQGPIGGIGLEGLTGTNGEPGSPGIRGDMGPP
GPLGHLGDDGKPGETGQPGPQGQMGVDGGRGSQGPPGPQGDRGETGPKGLQTSVETHGDP
GDAGEPGPTGVTGSKGERGLPGPQGRDARSGAPGEVGPEGPPGNPGRDGQTVPPGPRGLP
GSPGEMGRPGCQGEKGSTGPCGESGPDGQPGSGGPKGSKGEPSPPGPGSKGCPGEKGNSG
CPGLLGKKGKPGDSGSLGLPGVCGPCGPKGDSGPPGCRGPPGSLGEKGNDGSSGTTGPPG
PSGLSGNKGAPGDPGPAGPRGNQGQDGIPGPPGEKGAMGAPGTGPRGHEGGKGPPGSFGE
KGPPGPCGPAGSSGPGGNPGCPGPPGPPGLPGYPGLEGICTAGLGGEGGVSGAQGPRGPP
GCKGPPGPPGPGNKGEMGAKGAAGGPGSPGYPGDPGPRGKPGEDGPPGPPGHKGGTGETG
VTGPVGLKGDEGPPGNAGSQGPPGPTGRRGTKGKDATREVNLVPGDKGLTGDQGRQGQKG
PPGARGRHGIQGVKGSEGQAGNQGPGGHPGLKGDQGGRGFQGLKGVAGQRGPVGAKGIPG
LQGPCGDMTEKDGFLFTRHSQNLFVPSCPAGSSEVYSGYSLLFINGNNRAHGQDLGTLGS
CLPLFTTMPFLFCNTDSTCRYASRNDYSYWLSTNETLPGSVPFISGQLLESYISRCTVCE
ARANVIAIHSQTSLVPDCPSGWDRLWLGFSFVMETGVGAEGSGQPLASPGSCLENFRKIP
FIECHGRGTCNYYTDSYSYWLAALNPRDMFSKPKPKTVKGEFPGGLIGRCQVCMKRL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgggactgtgcagctgtgtgtccggaggtatggagcctccaggcggcctgagg
cggagcgtcgtcctgctgctggttctgcttctctgctgctgcggtgctcctgaacacagg
gtgtgtcactgcagtgggaagtcgttgtgtcactgtgatggggtcaaaggtcaaaaggga
gaacctggtaaccttggagaacttggacttcctggattgattggttaccctggaaacgag
ggtcaccaggggtcaccaggagagaagggtgaacatggagcagcaggaagtccaggactc
aaaggctcaaggggtctttcagggagaccaggttttccaggacctccaggacttccgggg
cttcctggacatgacggaccaattggccaaccaggtttcccaggatgcaatgggacaaag
ggggatgttgggtacagaggagcccctggagttcgaggacctgttggctttcaaggtcaa
acaggactgcgaggcacaaagggcgactcgttcgtcttccccgtccctcgggacattaag
ggaccaacaggtccaccaggaccagagggagaaaaggggctgaggggagatcttggtcaa
ctcggactcgcaggaccaccaggacccgctggacgccctggaagtcccgggtttcctggg
ttacagggagaaaagggtcaggagggtcccagtccagtgattccaggtcccagaggacga
aagggtgatcctggaccttctgggattcctggacagaagggaatcaaactgtacgctgag
ggacccaaagagctgaagggagaaccaggtgaagttggtgagaaaggctgtcgcggacct
aatggtgtacctgggaaagaaggggtgaagggagataagggtgatcaaggtgaccttggc
tcactgggtaaaccgggaaaagatggactcgtcggagaactcggtgatccgggagaccca
ggggaccgtgggtacctcggtcctccaggtattgaaggagccgagggggagacaggtgat
cgtggacttccaggttttccaggagagattgtttggaatcacatattcctgaagggtcag
cctggtgtcccaggaccccgaggaccccctggagcccctggagaaagaggaatccttggc
ttccctggactggagggagagtcaggtgtggctcctactgggcctctgggcccccagggg
acacctggtttcactggacaaaaaggagaaacaggagagcccggacccctcatcattgga
cccccaggagagactggagtcccaggagttccaggagctgaaggagaaccaggagaacca
ggagaaccagatgtcctgccaggagacgtcggtcctccgggagctagaggtgtgaaaggc
ctgatgggacttcctgggaccagaggggaggagggacagatgggtgacaagggggagaca
tgcttcgtctgtcctgttgttaacggatcccctggacccccgggtagacctggagagcca
ggtgaagccggggtgacaggtgtgaatggttctccgggacctgaaggtgacaaaggtgtc
acaggagttcgaggaccacctggtccacagggcccctttggttttcccggctacccgggg
accccaggacctgttggtgagccagggatcatgcacagggtggggaagaagggggaagaa
ggggccaatggggtgtcaggacagtcaggtcttgtggggacagacggagctgcgggagtc
cctggaccgaaaggtgttgtgggacagaaaggaaaccctgggcctctgggacagaaaggt
gacaggggcccactcggggagagcggtcccagaggacttataggacagagaggacctcca
ggacctcctggtatcggcattccaggacctccaggacctaaaggcaacgtgggagtcttg
ggacggcgagggattcctggaaaacaaggtgaaaaaggttctccaagtgaaatcaagacc
tctccaggtgatccaggacagaaaggagagaaaggtttatcaggaaatccaggacctgaa
ggtgagacaggacctccaggtgatcctggatttgctggtccaaagggagaagaaggagac
agtgggttttctgtgcaggggcccccagggttcccaggggtgaaaggagtgaagggccct
tcaggtgatccaggtttatcgagttttggaatcaagggacgtgctgggccatctggtcca
ccggggatgccggggccaaagggggacaaagctactggtttcccaggacagcagggtcag
ttggggcctcagggagatgatggctctgtgggctcccaaggagaacccggaccccaagga
atcaatggagttccaggacctccaggacaagatgccccaccagggcccaatggtcgttgt
ggtctggatggtgaacctggtccctttggctttgttggaccctgtaaagaaggggctcct
ggacctgatggagaggaaggacagatgggtgtcatcggattcacaggggccagaggcaca
aaagggttagagggtgaccctgggctgcccggcgtgggatccctggggcctcggggggca
aacggggctccagggttcgatggacctcaagggccaataggcggtatcggactggaaggc
ctgacagggaccaatggggagccaggaagcccaggtatcagaggggacatgggtcctcca
ggacctcttgggcatctaggggatgatgggaaaccaggagagacggggcaaccaggacca
caaggtcagatgggagtcgacgggggcaggggttctcaggggcctccagggcctcagggg
gacagaggggagaccggacctaaaggactccagacctctgttgagacacatggagacccg
ggagacgctggagaaccagggcccacaggtgtcactggtagtaaaggagagaggggcctc
cctggacctcaaggtcgggacgccagaagcggtgcacctggagaggtcggaccagaaggc
cctcctggcaaccctggcagagatggacagacggttcctcctggtcccaggggtcttcct
ggtagcccaggggagatggggaggccaggatgtcaaggtgagaaaggttccacaggccca
tgtggagaatctggcccagatggacaaccaggatcaggaggacctaaaggttctaaagga
gaaccgagtccacctggacctggatctaaaggatgtcctggagagaaggggaattcaggg
tgtccaggactattaggaaaaaaggggaaaccaggagactctgggagccttggtcttcca
ggagtatgtggcccctgtggccctaaaggtgactctgggcccccgggatgcagaggtcct
cctggatctcttggtgagaagggtaatgatggttcttcaggaacaactggcccaccagga
cctagcggtctttcaggtaacaagggggctcctggagatcctggtccggctggtccaaga
ggaaaccagggacaagatgggatacctgggcctccaggagagaaaggagcaatgggagct
cctggaactggaccccgtggccatgaaggagggaaaggtccacctggctcttttggagag
aagggtcctccaggtccatgtggccctgctggttccagtggtcctgggggaaatccgggt
tgtcctggtccccctggaccccctggtcttcccggctatcctggattggaaggaatctgc
actgcaggactaggaggagaaggcggagtctctggagcacaaggcccaaggggtcccccc
ggctgtaagggtcctcctggtcctccaggtcctggtaataaaggagagatgggagctaag
ggagcagctggtggcccaggatcacctggttaccctggcgaccctgggcctagaggaaag
ccgggggaagacggacccccgggtccacctggacacaaaggcgggactggagaaactggt
gtcacaggacctgtgggtctgaagggagacgagggaccaccaggtaacgccgggtcacaa
ggacccccaggaccaactgggaggagaggaacaaaggggaaggatgcaaccagggaggtg
aacctggttccaggagacaaaggcttgactggagatcagggccgccaaggacaaaaagga
cccccaggggctcgtgggagacatgggatccaaggtgtgaaggggagtgaagggcaagcg
ggtaaccaaggaccgggaggtcatcctggactgaaaggggatcaaggaggcagaggattc
cagggactgaaaggtgttgcaggtcaacgaggtccggtcggtgctaaaggtattccaggt
ctgcagggtccctgtggggacatgacagagaaggacggcttcctgttcaccagacacagc
caaaacctctttgtcccatcatgccctgcagggtccagtgaggtgtacagtggctactcg
ctgctgttcatcaacggaaacaaccgagctcacggacaagacctgggtacgttaggcagt
tgtctccctctcttcaccaccatgcccttcttgttctgtaacaccgacagcacctgtcgg
tacgcctcacgcaacgattactcctattggctctccaccaacgaaacactgccaggcagc
gtcccatttatctctgggcaacttctggagagttacatcagccggtgcactgtatgtgag
gcccgagctaacgtgatcgccatccacagtcagaccagtttggtcccagactgtccctct
gggtgggatcgtctctggttgggattctccttcgtgatggaaacaggtgtgggggcggag
gggtcaggtcagcccctggcctcacctggatcctgtctggagaacttcaggaagattccc
tttatcgagtgtcacggccgaggaacctgcaactactacaccgactcctacagctactgg
ctggctgcgctcaaccccagagacatgttcagtaaaccgaagcctaagactgttaaagga
gagtttccaggaggtttgattggtcgctgtcaagtgtgtatgaagaggctgtaa
DBGET
integrated database retrieval system
