Pleuronectes platessa (European plaice): 128440806
Help
Entry
128440806 CDS
T09923
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128440806 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pplt04131
]
128440806 (scarf1)
Membrane trafficking [BR:
pplt04131
]
Endocytosis
Phagocytosis
Scavenger receptors
128440806 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
128440806
NCBI-ProteinID:
XP_053279621
LinkDB
All DBs
Position
5:complement(18890033..18897799)
Genome browser
AA seq
995 aa
AA seq
DB search
MGRGNLGASTSLVALEPQDDSQERKRGSKGRREGCGGTERYSCLLLCPDWKENKLRGKTE
ILNRLDFQTRKIFGSSFWLRSGVEMKFVLSALSVLLCCWSSSSHTLDPTGKNVCRSIRDP
SSLVCCTGWRQEGNECTIPVCEGEQACLKDEICVYPGVCRCPPGYYGAHCKTRCPPEFWA
SDCRQVCRCHPHGRCNPVTGECTCNPNRWGPLCQYACKCTRHGHCHPSYGNCTCDQGWWT
PTCSKPCQCVSNGSVGPGCDQLTGRCECLRGHWGLKCPVTCNCYLSLCNKRTGVCECEAG
WWGPSCDRRCNCDLTHSSCDPGNGQCLCHPGYQGGYCNQPCESGKYGSGCKMSCGYCKDN
QLCSATDGACSACEPGWNGTQCDRPCPSAFYGDGCQEKCPHCRNNEPCDPKTGECWSCDP
GWTGPRCEEACPDRMFGEACRFPCSPCFHGNCSHVTGRCVCQPGFQGESCNSSCSAVQFG
LNCSSVCDCGEEVHCHPVTGVCPNSGRSAVLAGVLVPLLLLLLAVLCCCLCCGGGPVDSK
DRAAVADGGLYVRMKYHVYSVLANISAALPCISNWSSGLPRVTVSHHDPELTFNHSFIEP
PSSGWVTDGSSFDSDEEEGEALYCVPPREDIPALAGGEFQEMSSKCNMFLDPSGFSSEDI
TSPFNIPRTSSIAKYKRPSVSFAEGTRFSPKERRGSAQDPGALLRNKPKSTWGVLMLSAL
QSQGGAARPGDEDAAEGEEKEEEEVDEQATDNQESGCEAGNQEVDRTSSRATSQVQSSAG
RRRTMSNPAAHKGSLPQTSGCDAPAVVLNKVTTVYVTVGKAGRPVSDTSSDGPVQAMLRR
LGSLQRQKEQESGKSKSKGGEGITKPPRRKLGVRASVWEEGGPSGGEVAICKPIRRKHAS
HNSSDTVALSEVSQSENGTPKRPLSILRSVPELAASDPGLRAEDEDSSSGKTESNYFTVG
PAGDAASLTVVITNEGAVGSVNDEPCYENVMINNL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaggaaacctgggggcttcgacctctctggttgcactggagccgcaagacgac
tcacaggagagaaagagagggagcaagggaaggagggaagggtgtggggggacagagaga
tacagctgcctcttattgtgccctgactggaaggagaacaaactgagaggaaagacagaa
attctgaacagactggactttcagacgaggaagatattcggctccagtttctggttgcgg
tctggcgtggagatgaagtttgtcctctcagctctgagtgttctgctctgctgctggtcg
tcatcctcacacacactggaccctactgggaagaacgtctgccgcagtatcagagacccc
tcctcccttgtttgttgcactggatggcgtcaagagggaaacgagtgcactatacctgtg
tgtgagggtgagcaggcctgtctaaaggatgagatctgtgtgtatcctggagtgtgtcgc
tgcccacctggctactacggagctcactgcaaaacacgctgtcctcctgagttctgggcg
tcagactgtcgccaggtctgtcggtgccacccacacggccgatgtaaccctgtcacaggt
gagtgcacctgcaaccccaatcgctggggtccgctgtgccagtatgcctgcaagtgcacc
cgccatggccactgccaccccagctacgggaactgcacctgcgaccaaggctggtggacg
ccgacctgctccaaaccgtgccagtgcgtcagcaacggctctgtgggccccggatgcgac
cagctcacaggtcgctgcgagtgcctgagaggtcactgggggctcaaatgccccgtcacc
tgcaactgctacctgtcgctgtgtaataagaggactggtgtgtgtgagtgtgaggcaggc
tggtggggacccagctgtgaccggcgatgtaactgtgacctcacacacagcagctgtgac
cctggtaacgggcagtgcctgtgtcacccggggtaccagggtggctactgtaaccagccc
tgtgaatctggaaagtatggcagtgggtgtaaaatgagctgtggttactgtaaagacaac
cagctctgctctgccactgacggggcctgctccgcctgtgaacccggctggaacggtaca
cagtgcgaccgcccgtgcccgtctgctttttacggtgacggctgccaggagaagtgtcca
cattgcaggaacaacgaaccatgtgacccaaagacaggggaatgttggagctgtgacccc
ggatggacaggacccaggtgtgaggaggcctgtcctgacaggatgttcggagaagcctgc
cgcttcccgtgcagcccttgcttccatggtaactgcagtcacgtgacaggaagatgtgtc
tgtcagccaggctttcagggagagagctgtaacagcagctgctctgctgtgcagttcggc
ctcaactgctcctctgtgtgtgactgtggtgaggaggtccactgccacccagtcactgga
gtctgccccaatagtggcaggagtgctgtacttgcaggagtgttggtccctttgcttctg
ctgctgttagctgtgctctgctgctgtttgtgttgtggaggaggccctgttgacagcaaa
gacagggcggctgtggctgacggaggtttgtatgttcggatgaaatatcacgtctacagc
gtcctggcaaacattagtgctgctctgccatgtatctctaactggtcctcaggtctgcct
cgtgtcaccgtatctcaccatgacccagagctgaccttcaaccacagcttcattgagcct
ccgtcctctggctgggtgactgatgggtcgtccttcgacagtgatgaggaggagggtgaa
gctctctactgtgtccctccaagagaagacatcccagccttggcaggcggcgagttccag
gagatgagctcaaagtgtaacatgttcctggacccatcgggcttcagcagcgaggacatc
acctcacccttcaacatccctcgcacctctagcatcgccaagtacaagcggccgtctgtc
tctttcgcagagggcacccgcttcagccccaaagagcgccgaggctccgctcaggaccct
ggcgctctccttcgcaacaaacccaaatccacctggggagttttgatgctctcggccctt
caaagccagggaggtgctgcaagacctggggacgaggatgcagcagagggcgaggaaaag
gaagaggaggaagtggatgagcaggctacagacaaccaggagtcaggctgtgaggcaggg
aaccaggaagtagacagaacctcatcccgagccacctcgcaggtccaaagctcagcggga
agaagacggactatgtcgaacccagctgcacataaagggagcctgccgcaaacatctggc
tgtgatgctccggccgtggttttaaataaagtcaccacagtgtacgtgacagtgggtaaa
gcagggcgacccgtctcagatacgagctctgatggccctgttcaggccatgctgcgaaga
cttggcagccttcagagacaaaaagagcaggagtctggcaagtccaaatcgaagggaggt
gaggggatcaccaaaccacccagacggaagcttggagttcgggcgagtgtgtgggaggag
ggagggccgtctggaggggaggtcgccatttgtaaacctatcaggcggaagcatgcttcc
cacaactcctctgacacagtggcccttagtgaagtttcacaatcagaaaatggcaccccc
aaacgaccgttgtccattttgaggagcgtgccagagctggctgcatctgacccaggtcta
agggctgaggatgaggattccagttcaggaaagactgagagcaactactttactgtgggg
ccggcaggagacgctgcgagtctcacagtggtcatcaccaacgaaggagcggtgggcagt
gtgaatgatgaaccctgctatgaaaatgtcatgattaacaacttgtga
DBGET
integrated database retrieval system
