Pleuronectes platessa (European plaice): 128444766
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Entry
128444766 CDS
T09923
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128444766 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128444766 (edc4)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128444766 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
128444766 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
WDR55
EIF3I
PIN_8
Motif
Other DBs
NCBI-GeneID:
128444766
NCBI-ProteinID:
XP_053283389
LinkDB
All DBs
Position
7:3588630..3608981
Genome browser
AA seq
1395 aa
AA seq
DB search
MASGSDIDIKGATQHLRDILKLDRPSSSADAQSSGAQRKPSFNGELNGLLGAAGLLGSVD
RSIMSDSTAPISTDLCSTQESQIICLSGDDGSTCISITSSNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLSSAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQIVIHIRRPDDTPLNSHRRLIW
CPFILDDNEENQDDVSQTLALLHEDRAEVWDLEVLRANHSSWPVDAADVKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGRQDKPSSPFSRCLHELQPHGGRPLSCL
LFCDNHKRQDPEVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSSALPSLKA
SLDLAAEYLILTDVQRKVLYVMELRQDMEKGKANFTAVSEFLLTHPVLSFGVRDVAHSRL
QHTEVLPAEDESESMTTEGTQGPTESKSGIQIKLYCVHTKTLQDVQIWFQPNARSNSSLF
LPHSDSQDGFAAFSDHLVDQSSDKESGSGSQNDLRKIPSLPAPADFLSNSVSGSGPMPKL
MTPDAFMTPSTSVPASPASSASSLTIVTGTSSNSDSTNRALDDHSPNRAESSSSSLTLSA
STSSPRTAASAVLLPGLENLQAMASPSGLLSLDNSQIMDSPILQTLASPTRARSPDVISS
ASTAMSQDMPEIASQTLQLQRGLMSSLEPLPLSALQTDSMASAASALHLLTSPRTANSSL
LALELGGADGPVSGALESEPRLSHTPSLLENALSQENPGVGGGSSDGNVSHTPWPAAPDI
TRETRNSLRDNGLGDCSREESKVHINSPYHRRSYHLSQNDSQDTGAEQSDPDDEVASLGS
SSGNCGSRSSHRIPVKDWKTSPRGSPKLKRKIKKDDGEMAQSRQMDSAQMNVEVQEELLM
LLRSQQRELTELRGQIETMQSSIMAQVDHVLSNHQEQEQRRLERVLAESQNHQQQLQDQL
SQHLGHTLSSALTSRLDKVLREEIKKTVPQTISKSLEPVTGQLNNTIAAKLTAVEVTLKD
NVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGIVLPVFERGCQSMFQQINDSFKQ
GTQDYIVQLESHMKNRKQREQEARDPMVGQLQQMIDSFQNSSDQLANNITANVRGEVQHQ
IQMMVGNLQESILSHVQRIVKGEVGMAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQT
QQANILSLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQ
QLSSNLSTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSLLSK
RARRLMMMLQGLVNH
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggctcggatatagacattaagggtgcgacccagcacctgcgggacatcctg
aagctcgaccgccccagcagcagcgccgatgcacaatccagtggtgctcagaggaaacct
tcttttaacggagagctgaatgggctactgggggcagccggccttctgggaagcgttgat
aggtccatcatgtcagactctaccgcccccatctccacagacctctgcagcacccaggag
agtcagataatctgcctctccggtgacgatggctccacctgcatctctatcacatcaagc
aatgtggagattgtggcaagtcaagactccagcatcaacagcaaggctcgaggcagcaac
aaggtgaaaattcaaccagttgccaagtacgactgggaacacaagtattattatggcaga
ctgatagcggtgtccaactccttcctcgcttatgccatcagaggagccaacaaccatgcc
atgattcgtgtcctgagtctgtcttctgctgagcgttcgctgctgaagggattcacaggg
gccgtcacggatctggcctttgcccacctcgactcctctctgttgggttgtgtagatgag
gcgggcaacctaatggtctggcaactcacctgcactggaaacaagattctagatcagata
gtgattcatataagacggccagatgacactcccctgaactcccacagacgcctcatctgg
tgtccgttcattctggatgacaacgaggagaatcaggacgacgtcagccagaccctggcc
ctcctacacgaagacagggctgaggtgtgggacctggaagtcttgagagccaaccacagc
agttggcctgtcgatgccgcagacgtaaaggaaggcctcatcacagtgaagggacatact
cagcgagtcagtgaaggggccttgtctccagacggaaccgtgttagccacagccagccat
gatggttacatcaagttctggcagatatacatagaaggacgacaggacaagccgagctct
ccgttttccagatgtctgcatgaattgcaacctcacggaggccgtcccctctcctgcctc
cttttctgtgacaaccacaagagacaggacccagaggttcctttctggcgtttcctcata
acgggagctgatcagaaccaggagttgaagctgtggtgcactgtttcctggacctgttta
cagaccatcaggttctctccagatccgttcaactcctcagctctgccaagtttgaaggcc
agtctggatctcgctgctgagtatctcatcctcactgacgtacagaggaaggttttgtat
gtgatggagctgcggcaggacatggagaaagggaaggccaatttcacagctgtgtcagag
ttcctgctgactcaccctgtgctcagcttcggagtccgggacgtcgcccacagccgactg
caacacactgaggtcctccctgcagaggatgagagtgagagcatgactacagagggcact
caaggacccacggagtccaagtctggaatccagattaaactctactgtgttcacaccaag
actctgcaggatgtccagatctggtttcaacccaacgcacgttccaattcttcactgttc
ctgcctcattctgattctcaggatggttttgctgctttttcagaccatctcgttgaccag
agttctgacaaagagtcaggaagtggatcccagaacgacctgcggaagatcccatctctt
cccgctcccgctgacttcctgtctaactctgtctccggcagtgggccgatgcccaagctg
atgactcccgatgccttcatgacaccaagcacttcggtaccagcatcaccagccagcagc
gccagcagtctgaccattgtcacgggtaccagcagcaactctgactcaactaacagagct
ctagacgatcacagtcctaacagagctgagagcagcagcagtagtctcacactctctgcc
tccaccagcagcccaagaactgctgcttctgctgtcctgctgccaggactggagaaccta
caggctatggcgtctcctagtggtcttctttcactcgacaactcccagatcatggactcg
ccaatcctgcaaacactggcctctcccaccagggcccgctcccctgatgttatctcctcc
gcctccacggccatgtcccaggacatgccggagatcgcatcccagacgctgcagcttcag
cgtggactcatgtccagcttggagcctttaccactttctgcgcttcagactgacagcatg
gcgtctgctgcctctgctctgcacctgctcacctctccacgcacagccaacagcagtctt
ctagccctggaactgggaggtgcagatgggccagtaagtggggctctagagtctgagcct
agactcagccacactccctctttgctggagaatgccttatcgcaggagaacccgggggta
ggaggaggctcctcagatggaaacgtgagccacacaccttggccagctgcacccgacatc
accagagaaaccaggaacagtctcagggacaacggcctgggagactgttcaagggaagag
tcaaaggtgcacataaactcaccttaccatcgacgctcctatcacctctctcagaacgac
agtcaggacaccggtgcagagcagagcgaccctgatgatgaggtggccagcctgggctcg
tcttcaggaaactgtggctctcgctcctctcacaggatccctgtgaaggactggaagacg
tcaccacgaggttctccaaaactcaagaggaagatcaagaaggatgacggtgaaatggct
caatccaggcaaatggactcagctcagatgaatgtggaagttcaggaggagttgttgatg
ctcctgcgcagccagcagagggagctgactgagctgcgtggacagatcgaaaccatgcag
agctccatcatggcccaggtcgatcatgtcctgtccaaccaccaggagcaagaacagcgc
agactggaacgagtcctggccgagagtcagaaccaccagcagcagcttcaggatcagctc
agccagcatctcggccacaccctcagctccgcgctcaccagccgattggacaaagtgcta
cgagaggaaataaagaaaaccgtcccacaaacgatttcaaagagcctggagcctgtgaca
ggtcagctgaacaacacaattgctgccaagctgaccgctgtggaggtcaccctgaaggac
aacgtcagcaaggtggtcaaatccaagaacacgacggatgcaattggtcgagccgcagct
gaagcgatgcaggggccaatccaggccgcgtacaaagacgccttccagggcatcgtgctg
cccgtttttgagagaggctgccagtccatgtttcagcaaatcaacgacagcttcaaacag
ggaacacaagactacatcgtgcagctggagtctcacatgaagaaccgaaagcagagggag
caggaggcccgagaccccatggtgggccagctccaacagatgattgacagcttccaaaac
tccagtgatcaactggccaataacatcacagctaacgtccgaggcgaagtccagcaccag
atccagatgatggtgggaaacttgcaggagtctattctcagtcacgtccagcggattgtt
aaaggggaggtgggcatggccatgaaggagcagcaggcggtggtcacctccagcatcatg
caggcgatgaggtcggctgccggcacgcccgtcccaacagcacacctcgactaccagaca
cagcaggccaacatcctgtcgctcctccagcagggccagctcaaccaggctttccagcag
gctctgtcagccaccgatctgaacctggtgctgtacgtgtgtgagaccatcgactctcag
caggtgtttggtcagcacccctgtcccctgagccagcccgtcctgctgtcactcatccag
cagctttcctccaacctctccacccgctctgagctcaaaatcagttacctggaggacgcg
gtgatgaacctggaccacggcgacccgctgaccagagaccacatgtcctccgtgctggcc
caggtccgacccaaactctttgcgttcctgcagcaggacccccacagcctgctcagcaag
agggcgcggcgcctgatgatgatgctgcaggggctcgtcaaccactag
DBGET
integrated database retrieval system
