Pleuronectes platessa (European plaice): 128446284
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Entry
128446284 CDS
T09923
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03008
Ribosome biogenesis in eukaryotes
pplt03013
Nucleocytoplasmic transport
pplt03015
mRNA surveillance pathway
pplt05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128446284 (nxf1a)
03015 mRNA surveillance pathway
128446284 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
128446284 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128446284 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128446284 (nxf1a)
03009 Ribosome biogenesis [BR:
pplt03009
]
128446284 (nxf1a)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128446284 (nxf1a)
mRNA cycle factors
Stress granule specific factors
128446284 (nxf1a)
Ribosome biogenesis [BR:
pplt03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
128446284 (nxf1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
LRR_SKP2
RRM_NXF1-2
Motif
Other DBs
NCBI-GeneID:
128446284
NCBI-ProteinID:
XP_053285267
LinkDB
All DBs
Position
8:complement(15368929..15381131)
Genome browser
AA seq
681 aa
AA seq
DB search
MKSLFHKKIYPNLVVTRAVNSEHGDFTRRREFRSADIEVEGGKPDNYEATREHDDRAGPT
FRNRKGRGSHKGRSYDRSRRDRPRGGHQAGFAGPGPRSRLDDIDGDVTMGEGSQDNGSQH
RYVPYGKSGRKGEGRFDRDRQQGRGGGGGGGGGRGGGGGFRGGGRGGGSGGGGRNQSGWS
KVTIPHGRKYDKKWLMTALQDICSIPFTAVQYHVDHDRAHFYVDDPSTSIALRKCSHKIL
DTDGYKVEVHVNSSAPPSFLLADLKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLVS
NKVEVTLNRKTHMEAVITIIEENIPELTSLNLSNNRIHKLDELSELVSKVPNLKTLNLSH
NELKSDRELDKVKGLKLVELWLNRNPLCLYFKDQASYISAVRQRFPRLLKLDGNDLPPPI
GFDVETPTTIPACKGSCFGSDEIKVLILRFLQQYYSIYDSGDRQPLLDAYHDGASLSMTT
PYSTQNPSRSSLGEYHKDTRNLKRIKDTTMRFRLLKHTRLNVVAFINELPKTQHDIASFN
VDVNTYTNTLLSFTVSGVFKEVAVDGKSRDSTMAFSRVFITVPAGGSGLCIVNDQLFIRM
ATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFNR
AAQVFTQLKADGNIPEVAFNK
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctctgtttcataaaaagatttaccccaacctggtggtgacacgtgctgtgaat
agcgaacatggagactttaccaggaggagagagtttaggagcgctgatatcgaggtcgaa
ggaggaaaaccagacaattacgaagctacccgagagcacgatgatagagccggaccaaca
tttcgtaaccgcaaaggccgaggctctcacaaggggcggtcgtatgacagatctcgcaga
gaccgcccgcggggaggccatcaagctggctttgcaggtccaggaccacggtctaggctt
gatgacattgatggagatgtaaccatgggtgaaggctctcaggacaacggctcccaacac
agatacgtcccatatgggaaatctggtcgaaaaggagaaggacgatttgacagagacagg
caacaagggagaggaggtggtggtggtggaggtggtggtagaggtggaggtggcggcttc
agaggaggaggccgaggtggaggaagcggtggtggaggaagaaaccagtcaggctggtct
aaagtaacaataccacacggaagaaaatatgacaagaaatggttaatgaccgctcttcag
gacatctgttcaattcccttcacagctgtgcagtaccatgtcgaccacgacagagcccat
ttctatgtggatgatccctctacttctatcgctttacgcaaatgttctcacaagatctta
gacacagatggttataaggttgaggtacatgtaaactccagcgctccaccatccttcctc
cttgctgacctgaagcctgaacacttggagcacctgaagcaatgtatggcaaaacgtttt
gatggctcccagcaagcacttgacttgaacaacatccgaacagacccagacctggtgtcc
aacaaagtggaagtcaccttgaatcggaagacgcacatggaagctgtcattactattatt
gaagaaaacattccagagctgacttcgttgaacctgagcaacaaccgtatccacaaactg
gatgaactctctgaattggtttccaaggtgcctaatctgaagactctgaacctttcccac
aacgagctcaagtctgatcgggagctggacaaggttaaaggcctgaagctggtggagctg
tggctgaacaggaaccctctgtgtctgtacttcaaggaccaggcctcatacatcagtgct
gtgcggcagaggtttccccggcttctcaaactggatggtaacgatctccccccacccatt
ggatttgatgtggaaacacccaccactatcccagcgtgcaagggcagctgttttggatct
gatgaaatcaaggttctcatccttcgctttttacaacagtactacagtatatacgactct
ggggaccgacagccacttcttgatgcttatcatgatggagcatcgttatccatgacaaca
ccttactccacccagaacccctccaggagcagtctgggagaatatcacaaagacactcga
aacctgaaaaggatcaaagatacaacaatgaggtttcgactactgaagcacacacgactg
aacgtggttgctttcatcaacgagttgcccaaaactcagcacgacatcgcctcctttaac
gtcgatgtaaacacctacacaaacactctgctgtcattcactgtaagtggtgtcttcaaa
gaagttgctgttgacggtaaatcccgagactccaccatggccttctctcgagttttcatc
acagttccagcagggggttctggtttgtgcatcgtgaacgaccagctttttattcgaatg
gccacaacagaggagatccgccgcgcctttgtagctcccgccccaactccatcttcgagc
cctgtccccaccctcaccgcaccgcagcaggagatgctcacagccttctcacagaagtct
ggcatgaaccttgaatggtcccaaaagtgtctgcaagacaacgagtgggatttcaacaga
gcggcacaggtcttcactcagttaaaggcggatggcaatattcctgaagttgcgttcaac
aaatga
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