Pleuronectes platessa (European plaice): 128446496
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Entry
128446496 CDS
T09923
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128446496 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128446496 (polr1a)
Enzymes [BR:
pplt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128446496 (polr1a)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128446496 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
HMG_box_2
CDC45
Pox_C7_F8A
Hid1
Motif
Other DBs
NCBI-GeneID:
128446496
NCBI-ProteinID:
XP_053285546
LinkDB
All DBs
Position
8:complement(7888158..7909720)
Genome browser
AA seq
1702 aa
AA seq
DB search
MLFGKDVPWRRLEGMTFGMYSAEEIRKLSVKAITNFRFLDGVGNVAPNGLYDLALGPADS
KEVCSTCCQDFNTCPGHFGHVELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAALHLL
LSQLKLVDHGALLDVYTIEQVLNHYLEENPKASGDEIQQVLKAFTDKTLGDNPEGPQITK
PIKHLVEKKSSLINDFWRINMKTRKCPLCGSGRFPVRHEHNSKLIVTMPSGLKTPDNPDE
DQLAGKKVYMTASTAREHVNSLWEKEGFFLRCLFSGLEESAASAEGDKGFSSDHFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGENDAHEEEAPEQTDQ
SFLAGITGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDFAARSVICPDMYIGTNEIGIPMVFAIKLTYPQPVTPWNVKELRQAVINGPNIHP
GASMVINEDGRKTILSSSNLEQREAVAKQLLTPCPGPHKMPVKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKPGRVKLLPP
AIIRPQQLWTGKQVVSTLLLNVIPEKAVPLNLIGKSKIPSKAWIQVPPRAAPGYIPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANKRRAKIIKESLSIGTKALQAAFQLPSDVDQAEAQSRWQDAHLNP
DQRDFSIADHKFKEVANQVNNEINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDQTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFTFIEDNYEVIQRSQGLDKIMAHLDPQAANQHFAAIQRWKTKREVACPRRGAFLLFS
QKKMAKLKQTEQSTGPDVNGRNAAVHQLVQQWYSLDEVSRSKYSRRSSRCPEPSIGLLRP
DVCFGSVSENFQDITEKFLQNRGMTSQGTIDNHSLRQLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKRALKK
AKTLRKKLTRVCLAEVLQKVDVVESLRIEGHQKLRTFKVSFHFLPAKRYCNDKLLSPQQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDNDHTGDGSAGTAGLDDGEGEEGK
DIVDDQENEGDADASDAKRKGKQEEEVDYESEEEDGVEDAEDKEDQEEEAGDREEESQPE
CEGVRLDKKKKKKRAKKGEGEEREEEEAMSQMRVNSVLQSNTAIERYCYDHQNELWCELD
VVLPVSKVHFDLTSVLSTLAQNAVIMETRGLTRCLLNEAKTKTGEKETILNTEGINMHEM
FNYSDILNVNRLYSNEVHAMAQTYGIEVGLKVIEKEIKDVFAVYGIEVDPRHLSLVADYM
CFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKIVRG
GTGLFDLKQPLQSETSEKPRET
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcggaaaagatgttccatggcggcgcttggagggcatgacgttcggcatgtac
tctgccgaggagataaggaagttgagtgtgaaggcgatcactaacttccggttcctcgat
ggagttgggaatgtggctccaaacggtctgtacgacttggcccttggaccagcagacagc
aaagaggtgtgttcgacctgctgtcaggacttcaacacgtgtccgggtcactttggacat
gtggaacttcctctacctgtttacaacccactgttctttgataaactgtacctgttgatc
cgcgggtcctgtctggcgtgtcacatgttaacgtgtcccagagcagccctccacctgctg
ctgagccagctgaagttagtggaccacggagccttgttagatgtctacaccatagagcaa
gttcttaaccattatcttgaagagaatcccaaagcctctggagatgagatccagcaggtg
ctgaaagcttttacagacaaaaccctcggagacaaccccgaaggtcctcagatcaccaaa
ccaattaaacatcttgttgaaaagaagagcagtctgataaatgacttctggaggatcaac
atgaaaacaaggaaatgtccgttgtgcgggagcggaaggtttccagtacgccatgagcac
aacagcaagctgattgtaacgatgccttcaggattgaagacccctgacaatccggatgaa
gatcaactggctggaaagaaagtgtacatgaccgccagcactgccagagaacacgtcaac
agtctgtgggagaaagaaggtttctttctgaggtgtctgttctctgggctggaggagtct
gcagcgtcagcagagggagataaaggtttctcttctgaccacttcttcctggagctgctg
gtggttccaccttgcaggtatcgtccaatcaatcgacttggtgaccagatgttcactaac
ggtcagacagtcaacatgcaggctgtcatgaaagactgtggaatcataaggaaacttctg
gctctcatagccggggaaaatgatgctcatgaagaagaggctcctgaacagacagaccag
tcgtttctggcagggatcactggacagactttgacagataaactctacaacatctggatc
cgactacagacccacgtcaacatcgtgtttgacagtgacatggacaaaatgatgacagag
aaataccctggaatcagacagatcttggagaaaaaagatggattgttccggaaacatatg
atgggaaaacgagtggatttcgctgcacgttctgtcatctgtccagacatgtacatagga
accaacgagattggaatacccatggtgtttgccatcaagctgacataccctcagcctgtc
actccatggaacgtgaaggagcttcgccaggccgtcattaacgggcctaacattcacccc
ggtgcttccatggtgataaacgaggatggcaggaaaaccatcctatcatcctccaatctt
gaacagagggaagctgtggctaagcaactgctgacgccttgtcctggtccacataagatg
ccagtgaagatagtgaatcgtcatatcaagaacggagatgttttgttactcaacagacaa
ccgacactacacagaccctccatacaggcccacagtgcccgcatcctcccaggagagaag
gttttgaggctccattatgcaaactgcaaggcttacaacgctgactttgatggagacgag
atgaatgctcacttccctcagagtgagctaggcagagcagaggcctacacattagtcagc
actgaccagcagtacctagttcctaaggatggtaaacctctggcaggtctgatccaggac
cacatggtgtcaggaacgaggatgacgatacgaggctgtttctttaccagagaccagtac
accgagttggtgtatcgaggattaactgataaaccaggcagagtgaaactgctgccgcca
gccatcatcagacctcagcagctgtggacaggcaagcaggtggtgtccaccctcctactg
aatgtgatcccagagaaagcagtgcctctcaacctgatcggaaaatcaaaaatccccagc
aaggcgtggatccaagtcccgccacgtgctgctccgggatacatacctgacagcatgtgt
gactcacaggtggtgattcgtcagggtgagctgcttgtgggggttctggacaaagctcac
tatggctcctcagcctatggtctggtccactgctgctatgagctttacggaggagagacg
agcgggaaactgctcagctgtctagctcgactttttaccgcctacctgcagctttacaga
ggcttcactttgggtgtggaggacatcctggtgaaacccggcgccaataaacggagggca
aaaatcataaaagaatcactcagcattggcaccaaagccctccaggcagccttccaactg
ccctccgacgtggatcaagctgaggctcagagccgctggcaggatgctcaccttaaccca
gaccagagggacttcagcatagccgaccacaagtttaaggaagtggctaaccaagtcaac
aatgaaatcaacaaggtgtgtatgccaattggactccacacctctttcccagacaacaac
cttcaactgatggtccaatcaggagccaaaggatctactgtgaacaccatgcagatttca
tgtctactaggtcagattgagttagaaggtcgtaggcctccactgatgccctctgggaaa
ttcttgccgtgttttcaaccatatgaccctgcaccgggtgctgggggcttcgtgtctgga
agattcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcagagaa
ggactggtcgacacagccgtgaaaacctctcgatcaggatacctgcagagatgtgtcata
aaacatctggagggtctggtagtgcagtatgatcaaacggtgagggacagcgatgggtcc
gtggtccagtttctgtatggtgaagacgggctggacatccccaagactcagttcctgcag
ccacgacagtttaccttcattgaggacaactatgaggtcatccagagatcacagggcctt
gacaagattatggcacatttggaccctcaggctgccaatcaacactttgcagccatccag
cgctggaagacaaagagagaagtggcatgtccacggagaggagcgttcttgttgttttcc
cagaagaagatggcaaaactaaaacagactgaacaaagtacaggtccagatgtcaacggc
agaaatgcagctgtacatcaacttgtacagcagtggtattctctggatgaagttagcaga
tcgaaatacagcagaaggtcctcccgctgccccgagccctcgataggcttgcttcggcca
gacgtctgctttggatcggtgtctgaaaacttccaagacatcacagagaaatttctgcag
aacagaggcatgacgagtcaaggcacgatcgacaatcacagccttcgccagctgttgcac
tataaatggcagcgttcactatgtgatccgggtgaagctgtgggtctgctggctgctcag
tccataggagagccctccacccagatgacgctcaacactttccactttgctggcagagga
gagatgaacgtcactttgggaattcctcgactaagagagatcctcatggtggccagctcc
aatattaaaactcccatgatgagcgtcccagtactgaacaacaagagagccttgaagaaa
gccaagacgcttcgtaagaaactcaccagggtttgtctggctgaggttctgcagaaagtt
gacgtggttgagtcactgcggattgaaggccaccaaaagctgcggacgtttaaagtctcc
ttccacttcctgcctgccaagcgatactgtaacgataagctgctctcgccacaacagatc
ctccactacatggagacgaggtttttccgtctcctccttgaagccattaagaagcgcagc
gccaagctggcttccatagccgtggagacgaggaaagccacccctagagacaatgaccac
accggggatggatcggctggcacagcagggttagacgacggggaaggagaagaggggaaa
gacattgtcgatgaccaggagaacgaaggggatgctgatgcttcagatgccaagagaaaa
ggcaaacaggaagaggaggtggactatgagagtgaggaggaggatggagttgaagatgct
gaagataaagaagatcaggaagaggaggcgggtgacagagaggaggagtcccagcctgag
tgtgaaggagtaagactggacaagaagaagaagaagaagcgagcaaagaaaggggaaggc
gaagaaagagaagaagaagaggccatgagtcagatgagagtcaactctgttttgcagtcc
aacacagcaatagagagatactgctacgaccaccagaatgagctctggtgtgagttggac
gtggtcttaccggtcagcaaggtgcactttgacctgacctcagtcctgtcaacgctggcc
cagaacgccgtcatcatggaaaccaggggcctgactcgctgcctgctgaacgaggccaaa
acaaagaccggagagaaagagacgattcttaacacagaaggaatcaacatgcacgaaatg
ttcaactacagtgacatcttgaacgtcaacaggttgtactctaatgaggttcatgccatg
gctcagacctatgggattgaagttggtttgaaggtcatagagaaggagatcaaagatgtc
tttgctgtttacggtatcgaggttgaccccagacatctttccctggtagcggactacatg
tgctttgaaggtgtatataagcccttaaaccgacacgccatcagatccaactcctcccct
ttgcagcagatgactttcgagaccagttacaagttcctaaagcaggcaaccatgctgggg
tcccatgaccagctagtgtctccctcggcctgcctggtggtggggaagattgtccgagga
ggaacgggactgtttgacctgaaacaacctctgcagtcggagactagcgagaaacctcgt
gagacctga
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integrated database retrieval system
