Pleuronectes platessa (European plaice): 128447937
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Entry
128447937 CDS
T09923
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
pplt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128447937 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
128447937 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128447937 (lsm4)
03041 Spliceosome [BR:
pplt03041
]
128447937 (lsm4)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128447937 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
128447937 (lsm4)
Spliceosome [BR:
pplt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128447937 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
128447937
NCBI-ProteinID:
XP_053286365
LinkDB
All DBs
Position
9:complement(20841660..20844490)
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGLSG
PGRGQQQQIQLPQQQDKKPGKPQGMKNQH
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctctctgctgaagacggcccagaaccaccccatgctggtggagctgaaa
aatggggagacgtataacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctcaagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaagtatctgcgaatcccagacgagatcatcgacatggtgaag
gaggaggtggtgtccaagggccgcggacgtggaggtgcccagcagaacaaacagcagggc
aaaggaaggggaggagctggccgaggtctgtttggtggtcgtggcagaggattgagcggc
cccggtcgtggccagcagcagcagatacagctaccgcagcagcaggataagaaaccaggc
aaaccacagggaatgaagaaccagcactga
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