Pleuronectes platessa (European plaice): 128448657
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Entry
128448657 CDS
T09923
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03013
Nucleocytoplasmic transport
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128448657
03015 mRNA surveillance pathway
128448657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128448657
Enzymes [BR:
pplt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128448657
5.6.2.5 RNA 5'-3' helicase
128448657
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128448657
mRNA cycle factors
Common to processing body (P body) and stress granule
128448657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
128448657
NCBI-ProteinID:
XP_053287384
LinkDB
All DBs
Position
9:20854879..20868925
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQGQTQSQLDGQVNGPD
ENLLNGGVEDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPMWKGIGHV
IKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFLA
LHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGGRFMSTAMYDAREALIPGSAYDRSNAGRPSMYFHTHDQIGMIGAGPGHMAALNI
PIPLNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRLRGSGNQGSGQGNGPNSQV
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcttggacaccgaggaa
gcggagttgctcggagcggacacccagggctccgagtatgacttcaccgacttcacgtta
cccagccagacccagggccagacccagagtcagctggacggacaggtcaatggtcctgat
gagaatctcctaaacggcggagtggaggactccgtcgccaaagccagtcagctgctggcc
gagctcaacttcgaggaggatgaggaggacacgtactacaccaaagacctgcccgtgcac
gcatgcagctactgtggaatccatgatccagcctgtgtggtgtactgcaacaccagtaag
aagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccacttggtg
agagccaaatgcaaagaggtgactctgcataaagatgggccactgggagagacggtgctg
gagtgttacaactgcggctgtcgaaatgtcttcctgctgggcttcatcccggctaaagct
gattccgtggtggtgttactctgcaggcagccctgtgctagccagagtagcttaaaagac
atcaactgggacagctcgcagtggcaaccactgatccaggatcgttgctttctgtcctgg
ctggtgaagatcccctcggagcaggagcagctccgggcacgtcagatcaccgcccagcag
atcaacaagcttgaggagctgtggaaggacaatcccaccgccaccttggaggacttggag
aaaccgggcgtggatgaggaaccccagcatgtgctgctgcggtacgaggacgcctaccag
tatcaaaacatctttggcccgctggtcaaactggaggctgactacgacaagaagcttaag
gagtcccagacccaagacaatataactgtcaggtgggacctgggtctgaataaaaagcgg
attgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcagggtgat
gaaatctgcctgcgatacaaaggagatctggcaccgatgtggaaaggcattggtcatgtc
atcaaagtccctgacaactatggagatgaaattgccatcgagctgcggagcagcgttgga
gctccggtggaaatcccacacaacttccaggtggactttgtgtggaagtcaacttccttt
gacaggatgcaaagcgccctgaagacctttgccgtggatgagacttctgtgtctggttac
atttaccacaaactgctgggccatgaggttgaggatgtcactatcaagtgccagctgcca
aagcgcttcactgctcagggcctgcctgacctcaatcactcacaggtgtatgctgtgaag
acggtgctgcagaggcctctcagtcttattcagggtcctcccggtaccggaaagactgtc
acctctgccactattgtttatcacctgtcccgacagggcaatggcccagttctggtgtgt
gctcccagtaacatcgctgtggaccagttgaccgagaagattgacaagactggactaaag
gtcgtcaggctctgcgccaagagccgtgaggccatcgagtcccccgtgtcttttctggct
ctgcacaaccagatcagcaacatggacagtatgcctgagctgcagaagctgcaacagctg
aaggatgagaccggtgagctgtcgtctgctgatgagaaacgctacagggctttgaagcgc
accgctgagagggagctgctcatgaatgctgatgtgatctgctgcacctgtgtcggggct
ggagacccccgcctggccaagatgcagttccgctccatcctgatcgatgagagcacccag
gccaccgagccggagtgcatggtgcccgtggtgttgggagccaagcagctcattctggtg
ggcgaccactgccagctgggtcctgtagtgatgtgtaagaaggcagctaaggcaggtctg
tcccagtccttgtttgagcgcttggtggttctgggcatccgaccaatccgcctgcaggtc
cagtaccgcatgcaccctgccctcagtgccttcccttccaacatattctacgagggctcc
ctgcagaatggcgtcaccgcagctgaccgcattaagaaaggatttgacttccagtggcca
cagccggacaagcccatgttcttctacgtgactcagggccaggaggagatagccagctct
ggaacctcctacctcaacaggaccgaggctgccaatgtggagaagatcactaccaggctg
ctgaaggctggagccaaacccgaccaaatcggcatcatcaccccatacgagggtcagcgc
tcttacctggtccagtacatgcagttcagtggctccctgcacaccaaactctatcagcaa
gtggaaattgccagcgtggacgccttccagggcagagagaaggacttcatcattctctct
tgcgtccgtgccaatgagcatcagggcatcggcttcctcaatgaccctcgccgtctcaac
gtggcgctgaccagagccaagtatggtgtgatcattgtggggaacccgaaggccctctcc
aagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctggtggag
gggcccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtc
aacaccatcaaccctggtgggcgttttatgagcactgcgatgtatgatgcccgtgaggcc
ctcatccctggctccgcctacgaccgcagcaatgctggacgtccgtccatgtactttcac
actcatgaccagatcgggatgattggggcgggccccggtcacatggccgccctgaatatc
cccatacccttaaacctggtgatgcctcctatgcctccacccagctacttgggtcagacc
aacggccccgctgcaggtcgtggggcaatgaagggtaagcccgggcgtggcgggcggcag
aggctccgtggctctgggaaccagggctccggtcagggtaatggaccaaacagccaggtc
agccaggatggggcctcccagtccttctcccaggggccactgacacaaggctacatatcc
atgagccagccctctcagatgagccagcctggcctttcccagccagagctctcccaggac
agctacctgggagatgagttcaagtcccaaatcgacgtggctctgtcccaggactcgact
taccagggtgaacgtgcgtaccagcatggcggagtgactggactgtcacagtattaa
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