Pleuronectes platessa (European plaice): 128449022
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Entry
128449022 CDS
T09923
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128449022 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128449022 (ddx61)
03036 Chromosome and associated proteins [BR:
pplt03036
]
128449022 (ddx61)
Enzymes [BR:
pplt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128449022 (ddx61)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128449022 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
128449022 (ddx61)
Chromosome and associated proteins [BR:
pplt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128449022 (ddx61)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128449022
NCBI-ProteinID:
XP_053287951
LinkDB
All DBs
Position
10:complement(8172602..8180596)
Genome browser
AA seq
487 aa
AA seq
DB search
MATARTANPATMMGLNKAANGQFRGQTRPPGQQSGLLAAAQQSSDPMKRTGIPQSSGGIK
FGDDWKRCLELPPKDTRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLRKDHIQAMVMVPTRELALQMSQISIQL
SKHLGGVKVMATTGGTNLRDDIMRLEETVHVVIATPGRILDLIKKGVAVVDKLQMMVMDE
ADKLLSQDFVVLIEDIISFLPKSRQILLYSATFPCSVQTFMNKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSKLQINQSIIFCNSVQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITIDDRNNLKTIEDQLVTDIKPIPSCIDKSLYVAEFHSIDPDDDGDGKGK
HNELGEA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaactgcaaaccctgcaacgatgatgggattgaacaaagcagccaat
gggcaattcagaggacagacaaggccaccaggacaacaatcaggactgcttgcagctgcc
caacagtccagtgacccgatgaaaaggactggcattcctcagagcagtgggggcatcaag
tttggggatgactggaagaggtgcctggagcttccccccaaagacaccaggatgagaact
tcggatgtgacatcaactaagggaaatgaatttgaagactactgcctaaagcgggaactg
ctaatgggaatctttgagatgggatgggagaaaccctcccctatccaggaggaaagcatt
cccatcgccttgtcaggcagagatattttggctcgggccaagaatggcacaggaaaaagc
ggagcctacctcatcccaatgctggagaggatagacctgaggaaggatcacatccaggcc
atggtcatggtgccaacaagagagttggccctccagatgagccagatcagcattcagcta
agcaagcacctgggaggggtcaaggtcatggctaccacgggtggcaccaacttgagggat
gacatcatgcgtcttgaggagacagtgcacgtagtgatcgctacaccaggcaggatccta
gacttgataaagaaaggtgtggccgtcgtggataaacttcaaatgatggtgatggacgag
gcagataagttgctgtcccaggactttgttgtcctgattgaagatattatcagcttcttg
ccaaagagccgtcagatcctgctttactctgccactttcccgtgcagtgtgcaaacattc
atgaacaaacacctgcagaagccttacgagatcaacctgatggaggagctcaccctgaag
ggcatcacccagtactatgcctatgtgacagaaagacaaaaggtccactgtctcaacacg
cttttctctaagcttcagatcaatcagtcgatcatcttctgtaactccgtccaaagggtt
gagcttctggctaagaagatcacccagctgggctattcatgcttctacattcatgcaaag
atgatgcaggagtacaggaaccgtgtgttccatgacttcaggaatggactgtgcagaaac
ttggtctgcacagaccttttcactcggggaattgacatccaggcagtaaacgtggtcatc
aactttgacttccccaaaaatgctgaaacctacctgcaccgcatcggccgatcagggcgt
tttggtcacttgggtctggccatcaacctcattaccatagatgaccgaaacaacctgaaa
acaatagaggatcaactagtcaccgacatcaagcccatccccagctgcattgataagagc
ctgtatgtggcagagtttcactccattgacccagatgatgacggtgatgggaaaggcaaa
cacaatgaactgggagaagcctga
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