Pleuronectes platessa (European plaice): 128450437
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Entry
128450437 CDS
T09923
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03015
mRNA surveillance pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128450437 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
128450437 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128450437 (pabpc4)
03041 Spliceosome [BR:
pplt03041
]
128450437 (pabpc4)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128450437 (pabpc4)
mRNA cycle factors
Stress granule specific factors
128450437 (pabpc4)
Spliceosome [BR:
pplt03041
]
Complex C
Other components
Complex C specific factors
128450437 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
128450437
NCBI-ProteinID:
XP_053289855
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All DBs
Position
11:12766252..12775797
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AA seq
628 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGDDMDDERLKVFFDKYGKTLSVKVMTDPTGKSRGFGFVSYEK
HEDANKAVEDLNGTDLNGKTVFVGRAQKKMERQNELKRKFEMLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPNSLRQPGPRANLRHMTPNNNTQGPRGAG
QSMAPRPSMGVPGPRAMPPYKYATGVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLA
AAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAV
AVLQAHQAKKDATQKVGTMATTAAAATS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgaccgggagttatccgatggcttctctctacgtgggcgacctgcacccg
gacatcacggaggcgatgctgtacgagaagttcagccccgccggaccggtgctctctatc
cgggtctgtcgagacatgatcacccggcgatccctggggtacgcttatgtcaacttctcc
cagcctgcagacgctgagagagccctggacaccatgaactttgacgttgtgaaagggaag
cccatcagaatcatgtggtcccagagagacccctccctcaggaagtctggagtgggcaac
gtgttcatcaagaatctcgacaagaccattgacaacaaggccctgtacgacaccttctcc
gcctttggcaacatcctctcctgcaaggtggtgtgtgatgaaaatgggtccaagggctat
gccttcgtccatttcgagacccaggacgctgctgaccgtgccattgagaagatgaacggg
atgcttctgaatgaccgcaaggtgttcgtgggtcgtttcaaatcgcgcaaagaacgggag
gctgaactcggtgccagagccaaagagtttaccaatgtctacatcaagaactttggggac
gatatggacgatgagcggctgaaggtgttttttgacaaatatggtaaaaccctcagcgta
aaagtgatgacagaccccactggcaaatccagaggctttggatttgttagttacgagaaa
cacgaggatgccaacaaggcagtagaggacctgaacggcacagacctcaatggcaagacc
gtgtttgtggggcgggcgcagaagaagatggagcggcagaacgagctaaagaggaagttt
gagatgctgaaacaagaaaggatcagtcgttatcagggtgtaaatctgtacattaagaac
ctggacgacaccatcgatgatgagaaactgcgtaaggagttctctccattcggatccatc
acaagtgccaaggtgatgctggaggagggccgctccaaaggcttcggctttgtctgcttc
tcctcccctgaagaagccaccaaggctgtgaccgagatgaacggccggatcgttggctcc
aaaccgctctacgtggctctggctcagcgcaaagaggagcgcaaggcccacctcaccaat
cagtacatgcagcgtatcgcaggcatgagagccatgcccgctaatgctatcatcaatcag
ttccagcccactagcggatacttcatgccagcagtgccacagcaggcccagaataggact
acatactatgcacccaatcagctggcccaaatgcgtcccaacccccggtggcagcaacaa
ggtggtagaggtcaaggtggtttccaggggatccccaactcactgcgtcagccaggacct
cgggccaacctgagacacatgactcctaataacaacacacagggaccacgaggtgctggc
cagtccatggctcctcgtccctccatgggcgtcccaggcccccgagccatgcctccttac
aaatacgccactggcgtccgcaaccccaaccctcaggtggtgcagccgattgccttacag
caggctcagccagctgtgcacgttcagggccaggagcccctcacagcctccatgctggct
gcagcgccccctcaggagcagaaacagatgctgggggagcgtcttttccctctgattcag
gccatgcatgccaacctggcgggaaagatcactggcatgctgctggagatcgacaactct
gaactgcttcacatgctggagtctcatgaatctctgcgctcaaaggtggaagaagctgtc
gccgtgcttcaggcccatcaggcaaagaaagacgccactcaaaaagtgggcaccatggct
actactgctgctgctgccacatcctga
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