Pleuronectes platessa (European plaice): 128450458
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Entry
128450458 CDS
T09923
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128450458 (scaf8)
03041 Spliceosome [BR:
pplt03041
]
128450458 (scaf8)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128450458 (scaf8)
Spliceosome [BR:
pplt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128450458 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128450458
NCBI-ProteinID:
XP_053289894
LinkDB
All DBs
Position
11:13365342..13391213
Genome browser
AA seq
1426 aa
AA seq
DB search
MDAVKSFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIPTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSVTPVMSSSASAVNNATPGTPATPATPANLVQGLPDWAS
QINNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPMNSSLF
HQLAEQLQQQNLEQFQKQLMEHQQKAMSIEGQDSIFGQENSAATAQSISQQQLPDSENKM
DDSMDNQQQDMDMDLDEGPDGMEEESFEAEEKKAVTRSRTRSRSRSRSPKRRRSRSRSGS
RKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVG
QVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAFRARQKLSTGSFKIGSK
VIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWESA
KSAEPVKEVTSQQVSAETTAVSNSQAEAYNQQVTMMPVQLPVPQAVPSPVGLVPPSFPVP
MGIPPPGYGLPPPFLRAGFNAAQPPPGFMQAAQTAGMASATSSLGQPSVATGQDAVKESL
FGAMIPPTSSIPGSFMPSALAGAGLFNPMGVQTQVTHEKTAHSAERLDAAAELTLQGMQN
AVRSGMGLLGMHPSASLTHPLHQSGLAGQRMPGLLPLDVRPNLLQPGAAARFPLLLQHGP
TQQAVGLLESSLQAQARARAPFSQLDPFNRAQNLTNENVSKTEEKSSSNADEGKDQDYRF
PPMEKPSTGLLRTPPPDHRETLGGGAAGGAAGRPPLLQTPGTQPARSSLLGRLQALAGFT
PDNRWSQSRGDFDERDGMRGAPQAPSAPKGFQEERPTPGQSFPSRFDSRPGAAGGAGAPA
NASATSGPQAWNRSGTTTAPFDGESHQDLDDRRRQWDRQRDRDERDFDFRREMNGYRHSH
SREREHDRDRERDRDRDRERDRDRERERDRDKEKDRENQRERERGGWTPLLPLPTPLLPT
PSLNPNLTLNQGKLLAPLKLNPQLQQRFQSPLLPQAPGKPPLMGLNQPLPQVQIKTPPPS
QSQADTPEGQSETPASSESPQAQSPPSAQSPEPSPDDNIGQSPLTDAPIQAKSPPQSETP
PLSESEDESPSHTTAQSPSKTTASPGIESPNQALPLVEASPQYSPVAFTQAVSSPEEPTH
SVEEQESPQNIEEEEEEEEGEESQDSASSSQPQWVNGPVIDNMDVADPTPEGSPEPTSEP
ASESVHSESEAEQLASPKDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgtcaaatccttcaacaatgagctgtactcgctcaacgagtacaagccgccc
atctccaaggccaagatgactcagatcaccaagtctggaatcaaagctataaaattctac
aaacacgttgtccagagtgtagaaaagttcgtacaaaagtgcaaaccagaatacaaggtt
ccggggctgtacgtcatcgactccatcgtcaggcagtcacgacaccagtttggcacggag
aaggatgtttttgccccacgcttcagcaagaatatcatccctacgttccagcacctctac
cgctgcccttcagatgataagagtaaaattgtgcgagtgctcaacctttggcaaaagaat
gctgtcttcaagagtgacatcatccagcctctattggacatggcagcagggattgcgccg
ccgagtgtcacccccgtcatgtcaagcagcgcttccgcggtcaataacgctacaccaggc
accccagctaccccagcaaccccagccaacttagtccagggtctgccagactgggcctct
cagattaacaacacagacactgtggctgctgtggcacagatcctacagagtccccaggga
caacagctgcagcagttggtacagagtctgcagatgcagcaacagaaaccccagccgtcc
ctgctgcaggccttggacgccggcctagtggtgcagttgcaagctctgactgcacaactc
actgcggcagctactgccaacagcctcaaccccctggagcagagggtctcctcctttaat
aaaaaacttttgggtccatttgactttgggaatgattctgaacgtggcgaggaatctaaa
aaggactcctcatcatctcaactacctatggtgtccgagccgatgaacagctccctcttc
caccagttggcggagcaactgcaacaacagaacctggagcagtttcaaaagcagcttatg
gagcaccagcagaaggccatgagcatagaagggcaggattcaatatttgggcaggagaac
tctgctgcgactgctcaaagcatcagccagcaacagcttcctgattccgagaacaagatg
gacgactccatggacaaccaacagcaggacatggacatggacctggacgagggcccagat
ggaatggaggaggagagctttgaggccgaggagaagaaagctgtcacgcgctccagaaca
cgctcaaggtcacgctctaggtctcccaagaggaggcgatctaggtcccgctcaggctca
cggaaacgtaagcaccgcaagcggtcacgctcacgctccagagatcgcaagaggaagtca
tcacggtcttactcgagcgagagacgcgcccgggaacgagagaaggagcggcagaagaaa
ggactgcctcccataagatccaagacactgagtgtttgcagcacaactctgtgggtgggc
caggtggacaaaaaggccactcagcaagacctcaccaatctgtttgaagaatttggccag
attgagtctataaatatgatccctcccagaggctgtgcctacatctgtatggtccacaga
caggacgcattccgcgcccgccagaagctcagcaccggctcctttaagatcggctccaag
gtcatcaagattgcgtgggctctgaacaaaggggtaaagcaggagtacaagcagttttgg
gacgtggatctgggtgtcacctacataccctgggagaaggtgaagctggatgatctagac
gactttgctgaaggaggaatcattgaccaggagaccgtcaatgatgagtgggaatcagcc
aagagtgctgagccagtgaaggaagttacgagtcagcaagtgagcgccgagacgaccgct
gtatcgaactctcaggctgaggcatacaaccagcaggttaccatgatgccagtacagctg
ccagttccacaggcggttcccagtcccgtgggtttggtaccccccagcttcccagtcccc
atgggtataccccctcctggctatgggctgccaccacccttcttaagagctggcttcaat
gctgcacagccgccgccaggttttatgcaggcagcacagaccgcaggcatggcctcagct
acttcttctctagggcagccttcagtggccaccggccaagatgctgtcaaggaatctctg
ttcggcgctatgatacctccaaccagctccattcccggcagcttcatgccctcagccctc
gctggagccggtctgttcaatccaatgggagtccaaactcaggtcacccatgagaaaacg
gctcactctgcagagagactagatgccgctgcagagctcacacttcaaggcatgcaaaat
gcagtccggagtgggatgggtctccttggcatgcacccttcagcttccctcacacaccca
ctgcatcagtctggtctcgcagggcagagaatgcccggcctgttgcctctagatgtgcga
cctaacctcctccagcctggggcggcagcccgcttcccactcctcctgcagcacggcccc
acccagcaagccgtgggcctccttgaaagttctctccaggctcaagctcgtgccagggct
cctttctctcagctggaccccttcaacagggcccaaaatcttaccaatgaaaatgtatcc
aagacagaagaaaagtcctcctctaatgctgatgagggcaaagaccaggactatcgcttc
ccccctatggagaagccgagcacgggcctgctgaggacccctccaccagaccatagggag
acccttggaggaggagcagcaggcggagcagcaggcagacctcctttgctccagacgccg
gggactcagcctgccagaagcagcctcctgggacgactgcaggctctcgcaggcttcact
cctgataaccgctggagccagtccagaggggactttgatgaacgagatgggatgcgagga
gccccacaggctcctagcgctccaaaaggcttccaggaggagcgccccacacctggacaa
agtttccccagccgctttgacagccgtcctggggcagcaggaggggctggggctcctgca
aatgctagtgctactagtggaccacaggcctggaaccgaagtggtaccactacagcacct
tttgatggcgaatcacaccaagacttagacgaccgaagacgccagtgggacaggcaaaga
gacagagacgaaagagattttgatttcaggagagagatgaatggttaccgccacagccac
agccgagagagagaacacgacagggacagggagagggacagggacagggacagggagagg
gacagggacagggagagggagagggaccgggacaaagagaaagaccgtgagaatcaacgt
gagcgtgaacgtgggggctggacacctctccttcctcttcctacacctctgcttcctact
ccatctcttaatcccaacctgaccttgaaccaaggtaaactactggcaccactcaagtta
aacccccagcttcagcaacgattccagtctccactcctgcctcaagctccgggcaaaccc
cccctcatgggtctgaaccagccgctccctcaggttcagatcaagactccccctccatcc
cagagccaggcagacacgcccgagggccagtcagaaacaccagcttcgtctgagtcacct
caggcgcagtcgccaccctcagcccaatccccggaaccatcacctgatgataatataggt
cagagccccttgactgacgctcccattcaggccaagtcaccaccacagtccgagaccccc
ccactgtcagaatccgaagatgaatcaccatcccacaccacagcccagtccccctccaag
accactgcttctccaggaattgagagcccaaaccaagccctacctttggttgaggcatca
ccccagtactcacctgtggccttcacacaagctgtcagctcccccgaagagccgacccac
tctgtggaggagcaggaaagcccacagaatattgaggaggaggaggaggaggaggaaggg
gaggagtcacaagacagtgcctcctcaagtcaaccccagtgggtcaacggacctgtgata
gacaatatggatgtggctgaccccacacccgagggttctcctgagcccacttcagagcca
gcctctgagtctgtgcactctgaaagtgaagcggagcagcttgcctctcctaaggacgta
gacaatgaacagagtgagcccatggaggaagctgcgagtcagccagtggtagacactgtc
acagacactgaggggacataa
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