Pleuronectes platessa (European plaice): 128450858
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Entry
128450858 CDS
T09923
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04140
Autophagy - animal
pplt04148
Efferocytosis
pplt05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128450858 (vps39)
04148 Efferocytosis
128450858 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128450858 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pplt04131
]
128450858 (vps39)
Membrane trafficking [BR:
pplt04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
128450858 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
128450858
NCBI-ProteinID:
XP_053290566
LinkDB
All DBs
Position
11:3688663..3708224
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AA seq
876 aa
AA seq
DB search
MHDAYEPVSILEKLPLQIDCLAAWEDCLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVAQYKILVSLLENNVHVHDLLTFQQITVLSKAKGATLFACDLQQTSPGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVTPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVAMVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVEYLQRLGVENLG
FIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFTELAIPYLEHIIYVWD
EKGPEFHNVLIQLYLERVQVLMKEYLNSLPEGVPAVAAGKEKGSLGEFRMKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHSHYNSSVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSGPQANLQAALQVLELHHSKLNTSKAINLLP
ANTQIREIRVFLESVLEERAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRTLCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtacgaaccggtgtcgattctggaaaagctcccgctccagatcgactgt
cttgcggcctgggaggactgcctgcttgtgggtacgaaaccagggcatctccttctctac
cggatcaaaaaggatgcaggtaccaatcggttcgaggtgacgctggagaaatccaataag
aacttctcaaagaagattcagcagctttatgttgttgcccagtacaaaatccttgtcagt
cttcttgagaacaacgtccacgtccatgacctcctgacgttccagcagatcactgtcctg
tccaaagccaaaggagctacactctttgcatgtgatctgcagcaaaccagcccaggggag
gaaaggctgagaatgtgtgttgcggtgaaaaagaagctccagctgtattactggaaggat
agagagttccatgagctgcagggcgactttgctgcaccagatattccgaagtccatggct
tggtgtgaaaactccatatgtgttggtttcaagagagactattaccttattcggatggat
ggtcgcggctccatcaaggagctcttcccgactgggaagcagttggagcctctggttaca
ccactggctgatgggaaggtggctgtggggcaggatgacctcactgttgtcctgaatgaa
gagggggtttgcacccagaagtgcgccctgaactggacagacatccctatagcgatggag
caccagcctccgtacatcatcgccgttctcccccggtacgtggagatccggaccttcgag
ccgaggctgctggtgcagagcgtggagctgcagagacctcgcttcatcacctccgcaggg
cagaatattgtgtatgttgccagcaaccactttgtgtggcgcctggtgcctgtgtccata
gccagccagatccggcagcttctccaggacaagcagtttgagttggctcttcagctggcg
aagatgaaggatgattccgatggtgataagaagcagcagattcatcacatccaaaatctc
tacgccttcaatctgttctgccagaagagatttgatgactccatgcaggtgtttgccaaa
ctcggcacagatcccacacatgtgatcggactgtacccggacctgctcccagctgactac
cgcaaacagctgcactatcctaacccactacctacgctgtccggggcggagctggagaag
gctcacctcgctctgattgattacctcacccagaaacgcagccacctggtgaaacagctg
aacgactcggacccttccacgacatctccactcatggagggaacaccgactattaagagc
cgcaaaaagctcctgcagatcattgataccactctgctgaagtgttacctacataccaat
gtggccatggtgtcccccctcctgcgcctggagaacaaccactgccacatcgaggagagc
gagtacgttctcaagaaggctcacaagtacagtgagctgattatcctttatgagaagaag
ggcctgcaccagaaagctctgcaggtgctgctcgaccaatccaccaaggccaactctcca
ctgaagggccacgagcgaacagtggagtacctccagagactgggagtcgagaatctgggc
ttcatctttgagttttcaccctgggtgctgaagatctgtcctgaggacggtctgaagatt
ttcactgaggacctgacggaggtggagactctgccccgggacaaggtgcttaacttcctg
aaagagggcttcacggagctcgccatcccataccttgagcacatcatctacgtgtgggac
gagaaaggcccggagtttcacaatgtgctgatccagctctacctggagagggttcaagtc
ctcatgaaagagtacctcaactcactgcctgaaggggtcccagctgtggctgcagggaag
gagaagggcagcctgggggagttcaggatgaagctgctgtctttcctggatatctctacc
agctatgaaccagccagactcatcagtgatttcccctttgatggtctgctggaggagcga
gctctgcttctgggtcggatgggcaaacacgagcaggcgctcttcatctacgtgcacgtc
ctgaaagacacccacatggctgaagaatactgtcacagtcactacaacagttcagtggaa
ggaaataaagacgtttatctgtctctgctgcgaatgtacctgtcgccccctgatgtccac
tgtctggggcccatcaagatggagctgtcggggcctcaggccaatctccaggctgccctg
caggtcctggagctgcaccacagcaaactcaataccagcaaggccatcaacctgctcccg
gcaaacactcagatcagagagatccgggttttcctggagagcgtcctggaggagagggct
cagaggaaacgctgcaaccaggtgctgaagagtctcctgcaggccgagttcctcagggtg
caggaggagaggatcttccaccagcaggtgaagtgcgtcatcacggaggagaagacctgc
agagtttgcaaaaagaaaataggaaacagtgcgttcgccaggtatcccaacggcgtggtg
gttcattacttctgctgcaaagaccgcacgctgtgtcccaccgagcagtga
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