Pleuronectes platessa (European plaice): 128451024
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Entry
128451024 CDS
T09923
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128451024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128451024
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128451024
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128451024
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128451024
U7-dependent histone pre-mRNA processing factors
128451024
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
128451024
NCBI-ProteinID:
XP_053290770
LinkDB
All DBs
Position
11:11910560..11916984
Genome browser
AA seq
690 aa
AA seq
DB search
MASKRKVDVIVPAEESDQLIIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISLDDMLYTESDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCTQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQSQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKLFKNVTLTHEVGMVVLEWVANPLNDMYADAVTTVVLEVQSNPRA
QKVMQTQSVVMDMDVFQARLEVMLQDMFGEECVDFSDGRNISVTVDGKTVLICLETRAVR
YEDECTEDDTLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaaacgtaaagtagacgtgattgttccggctgaggagagcgatcagcttatt
atccgcccgcttggagctggtcaggaagtgggaagatcatgcatcatcctggagttcaaa
gggaggaaaatcatgctggactgtggcatccacccgggcttggagggaatggacgctctc
ccctacatcgacttgatcgacccagctgagatcgacctgctgctcatcagccatttccat
ctggatcactgtggtgctctgccctggttcctccagaagaccagttttaaaggcaggacg
ttcatgacccacgccaccaaggccatctatcgctggctgctgtcggactatgtcaaagtc
agtaacatttctttggacgacatgctgtacaccgagtccgacctggaggagagcatggaa
aagatcgagaccatcaacttccacgaggtcaaagaggtcgctggaatcaagttctggtgt
taccacgctggtcacgtgctgggagcggccatgttcatgatcgaaatagccggagtcaag
ctgctgtacacaggagacttctcccgacaagaagaccgacatctgatggcagctgagatc
cccagtgtcaaacccgacatcttaatcatagagtcaacctatggaacccacatccatgag
aagagggaggagcgtgaagcccggttctgtaacaccgtgcatgacatcgtcaacagagaa
ggtcgctgtttgatccccgtgttcgctctgggacgggcccaagaactgctgctcatcctg
gacgagtactggcagaaccacccggagctccacgacattcccatctactacgcctcatcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaacgcaatgaatgataagatc
cgcaaggccataaatatcaacaacccctttgtcttcaagcacatcagcaacctgaagagc
atggatcatttcgatgacatcggccccagcgtggtgatggcgtctcctggtatgatgcag
agcggcctgtccagggagctcttcgagagctggtgcaccgataagagaaacggggtcatc
atcgccggatactgtgtggagggaacactcgctaagcacatcatgtcggagccggaggag
atcaccaccatgtcgggacagaagctgcagctgaagatgtcggtggactacatctccttc
tctgcccacaccgactaccagcagaccagcgagttcatccgggcgctcaaacccccgcac
gtgatcctggtccacggggagcagaacgagatggcccgtctgaaggctgctctgatcaga
gagtatgaggataacgaccaggttcacatcgaagttcacaaccctcgcaacacggaggcg
gtcaccctgaacttcagaggagagaaactggccaaggtgatgggctctctggcggataag
aagtgcactcagggtcagagggtgtcaggcatactggtgaagaagaacttcaactaccac
atcctcaacccctccgacctttccacatacacagagttggccatgagcacggttaaacag
agccaggccatccccttcactggaccgtactcactgctcgtctgccacctgaggaacctc
actggtgacgtggaagagctggacggaactgagaagaacactttgaagctttttaaaaat
gtcactctgactcacgaggtcgggatggtggtgctggagtgggtagcgaaccctctgaac
gacatgtacgctgacgccgtcaccaccgtggtgctggaggtgcagtcgaacccgagggct
cagaaagtcatgcagactcagagtgttgttatggacatggacgtcttccaagcccgacta
gaagtcatgttgcaggacatgtttggagaggagtgtgtggacttcagtgacggtaggaac
atctcagtgacagtcgacgggaagacggttcttatttgcttggagacgagggcggtgcgc
tacgaggacgagtgcacggaggacgacacgctgagagagatggtggagctggcggtgcag
cggctctacgacgccctcaacccggtcatctga
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