Pleuronectes platessa (European plaice): 128451551
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Entry
128451551 CDS
T09923
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128451551 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pplt04131
]
128451551 (si:ch211-266g18.9)
Membrane trafficking [BR:
pplt04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128451551 (si:ch211-266g18.9)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
128451551
NCBI-ProteinID:
XP_053291393
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Position
11:7817620..7823232
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AA seq
845 aa
AA seq
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MAFKAFTKTQIYEKHEAPKEKDKLGIQCLECFDRNLYIGSKNATVQHLILQNSTDADLSP
GQSKTREGRARKLGSSNPVVQLRAVPLFNHLLVLWDRGVTALNMFSLEPVPALKKIQHVS
LFEVCDSLLAARVGCVQMVTSSSRRRVIRIHVVGVDSWEVLKEVPLQQDPVALAVDGTSL
CVGTCDRYLLCDVETGSREELFPHKHNRQRVIVTSVGRGEFLLNGPESLGMFVMKTGICQ
RPPLQWPQEVLAATVCFPYILTLQPQLLSVYSMLDQRCKQSVSLHGGKGLLSTSDGVLVF
TEREIFSLSLVPFEEQIQALVGHERVEEALLLLDGVQSRRPLDSYKELQKAITCLAGFVH
FYQEGFSEARELFIAGELDPRELILLYPDMRSCLSNDFQSQFDQGTQKGRALQVLWREDT
NMFHHYLHFLADFLQAVRGTERDSACSAEVDCALLRLYVVLGDTGNLQQLVTSPNECKLD
HCVPALEKNNRYFALGSLYQSQGRQTDAIKTWVNIAEGAHQDDSCSDVYGHIVRTLSQLD
DRDIVRKFADWTLQKNQEKGVQIFTNRPPDDRLETQDVLVLLEKYPLASVLYLEFLIHDL
SSEEERHHSRLALAYVAQTLREEEEADLRSTRGKLQHLLWESKFYDVSTVYERVKSTTLH
VETAILLGRSGEHSRALQVLVHQERDPQAAEAYCCRAAQGHDAPFRQALLLTLLQIYLSS
EDPTGTAVDLLNDNPRAFAAEEVVQLLPDSWSVQLVSQFLVGSVRATLHQSRVVKLQKAL
ARVELMRHKVTWMQASKAMFRLDKEQTCKVCQRVLAEPHFACDLHGQLMHVGCTINQSVA
CSGTL
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaagcattcacaaaaacacagatctatgaaaaacacgaagctccgaaagaa
aaggacaaactggggatccagtgcctcgagtgcttcgatcggaatctgtatattgggagt
aaaaatgcaacagtgcagcacctcatcctacaaaacagcacagacgcagacctgagtcct
ggtcagagcaaaaccagagaaggtagagccagaaaactgggctccagcaacccagtcgtc
cagctgagagcggtccctcttttcaaccacttgcttgtcctgtgggaccgcggcgtcacg
gccctcaacatgttctccctggagccggtccctgccttgaagaagatccagcacgtgtct
ctgtttgaggtgtgcgactcattgctggcagctcgggtaggatgcgtgcagatggtgacc
tcctccagccgcaggagagtgatccgcatccacgtggtgggagtggacagctgggaggtt
ctcaaggaggtgcctctacaacaggatcccgtggccttggcagtagatggcaccagtctg
tgtgtaggcacctgcgacaggtacctcctctgcgacgtggagaccgggagcagagaggag
ctctttcctcacaagcacaacaggcagcgcgtcattgttacctcggtgggacgaggggaa
ttcctcctgaatgggcctgaatctttgggcatgttcgtgatgaagacggggatttgccag
cgccctcccctgcagtggcctcaggaggtgctggcagccacagtgtgtttcccttacatc
ctcaccctgcagccccaactgctatctgtctacagcatgttggatcagcggtgcaagcag
agtgtgagcctccatggagggaagggtctgctctccacatcagatggcgtgttggtgttc
acagagagagagattttcagcctgagtctggtgccgttcgaggagcagatccaggcactc
gtaggacacgagagggtcgaggaggctttactgctgctggacggggttcagagccgtcgg
ccactcgactcatacaaggagctgcagaaggccatcacttgcctggctggatttgttcat
ttttaccaggagggcttttccgaggccagagaactattcattgcaggcgagctggacccc
agagaactcatcctcctctacccagacatgaggtcgtgtctcagcaacgacttccagtcc
cagtttgatcagggaacccagaagggcagggctctccaggtgctctggcgagaggacaca
aacatgttccatcactacctgcacttcctggcagattttctccaagctgtcagggggact
gagcgagactcagcgtgcagtgcggaggtggactgcgccctcctgaggctgtacgtggta
ctgggagacactgggaacctgcagcagcttgtcacttctcctaacgagtgcaagctggat
cactgtgttcctgctctggagaaaaacaacagatattttgcgttaggttccctctatcaa
agtcaagggaggcaaactgatgcaataaagacttgggtaaatattgcagagggcgcccac
caagacgactcttgctcagacgtgtacggacacatagtacggactctcagtcagctggac
gacagagatatcgtgaggaagtttgcagactggactctgcaaaaaaaccaagagaaaggt
gtgcagattttcaccaaccgccctccagatgatcgactggagacacaggacgtcctcgtc
ctcttggagaaatatccgctggcgtcggttttgtatcttgagttcctgatccatgatttg
agcagcgaggaggaaagacatcacagccgtctggccttggcatatgttgctcagacgctg
cgagaggaagaggaagcagatttgaggtcaaccagggggaagctgcaacatctgttatgg
gaatccaaattctacgacgtctccactgtatacgagagagtcaagtcaacgaccctgcac
gtagagacagccattctcctcggcaggagcggggaacactcccgggctctgcaggtgctc
gttcaccaggagcgagacccccaggctgcagaggcctactgctgccgggctgcccagggc
catgacgctcccttcagacaggccctgctgctcaccctgctccaaatctacctgagctcc
gaggatcccaccggcactgcggtggatctgctgaacgacaaccctcgggcctttgcagcg
gaggaggtcgtccagctcctgcccgactcctggtctgttcagctcgtctcccagttctta
gtgggatccgtgagggcaacgctccaccagagtcgtgtagtgaagctgcaaaaggcgctg
gcccgggtggagctcatgcggcacaaggtcacttggatgcaggcctcaaaagcaatgttc
agactggacaaggagcagacgtgtaaggtctgtcagcgagtcctcgccgagccccacttt
gcctgtgacctgcacggccagctgatgcacgtgggctgcacgatcaaccagtctgttgcc
tgctctggcacattatga
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