Pleuronectes platessa (European plaice): 128453809
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Entry
128453809 CDS
T09923
Name
(RefSeq) collagen alpha-1(XIX) chain
KO
K24340
collagen type XIX alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128453809
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128453809
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128453809
NCBI-ProteinID:
XP_053292873
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Position
12:complement(13237360..13335141)
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AA seq
1128 aa
AA seq
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MLCSLRWTVVLWSLNIIHCTFGMAVSEQTDGSCPPLSVEERRFTDALDRPLEITGFDLTE
KFLLRKGTITEDLPSFRLGSSPLIKPTKFIFQNGLSSEYSLVTTFRVRRTTKKDRWYLWQ
IFDQSGGSQVSVVVDGGKKVVEFSFQGLLKNTLRYTFKSRDLHALFDRQWHKLSVSVQSN
IVSIYMDCKLIERRLTDEKDDLDPSGRTLITTRVEDGRPVDIELRLFLIYCDPYMAEMEN
CCELLEPKCEAKKTLNGTSTPPVTEKLPQMLSQPVLQSMDRCLCPAEKGDAGLPGIVGLA
GEKGDTGDKGDLGEAGPTGNLGHKGESGSEGQKGIDGEKGLKGDLGPIGPVGPKGSKGDV
GTPGAPGLPVDKECLKGDQGPRGDKGEKGLAGVPGQPGEPGKEGKRGRRGKSGEPGPKGL
TSPSGTSEGASIKGEKGESGVPADKGERGDPGQPGAEGADGMKGQKGDIGPPGPPGPVMT
AHGLRHLSGSDEMKERSQKGEKGDQGERGTQGFKGNIGPPGLKGDQGPAGKQGLPGPTGL
PGLPGEPGSSGEPGGPGRDGLKGEKGDSAGVMAPQGPPGPKGEPGEPGGGYMGDGLPLTR
GSRGPKGERGVPGLPGEHGEKGEVGESVMGLPGLMGPPGKPGIEGPRGSTGLSGPPGAPG
REGSPGRSGPPGPPGPAGEPIALPLVGDMGALLKNACSVCQTRVPGMPGQRGEKGTPGAQ
GVEGMVGEKGDPGIRGPMGNPGKEGPKGVKGERGFPGPTGDKGDEGPSGVPGLPGVTGRT
GAPGLLGRPGPLGQSGGKGDKGNEGPTGRPGLPGPPGVPYVEGNGMSSLYKLQSGGALLG
PPGAPGAPGPKGDEGVAGEPGAMGLPGLEGLPGAKGDIGLPGSPGASGPPGKPGTRGELG
IPGEPGERGPLGETGFPGPEGPQGVPGRPGKDGTPGYKGSSGTAGDRGSKGERGDTGISG
ERGVQGERGRTGDPGPIGPLGPAGHKGDPGPPGQLESSTLLGDPGVMEELKMFIQNQVLR
ILEEKLSSAAMMQKTPAGILGSQVQGPPGPPGKDGFPGPPGEHGPPGPQGYRGQKGERGQ
LGLGLPGDPGSTGAPGPPGITTKAPPGSPGPRGPPGTCDPGDCLPPSL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctcgctgagatggactgttgtcctctggagtttaaacatcattcactgcacg
tttggaatggcagtgagtgaacagacagacggctcttgtccccctctgagcgtggaggag
cgcaggtttaccgatgctttagatcgtcccttggaaatcacaggattcgatctcacagaa
aagtttcttcttcgaaagggcacgatcacggaagacctgccgtcctttcgtttaggaagc
agtccacttattaagccgacaaaattcatatttcaaaatggactttcaagtgagtactcc
ctcgtcaccaccttccgggtcagaagaacgacaaaaaaagaccgctggtatctttggcag
attttcgaccaatcaggaggcagtcaggtgtccgttgtggtcgacggcggcaagaaggtg
gtggagttctccttccagggtctgctgaagaacaccctgcgctacacattcaagagccga
gacctgcacgccctcttcgatcggcagtggcacaagctgagcgtctccgtgcagagcaac
attgtctccatttacatggactgcaagctcatagaacggaggctgaccgatgagaaggac
gacttggaccccagtgggcgaacgctcatcaccacacgggtggaggatggacggcctgta
gatattgaactcaggctatttctaatctactgtgacccctatatggcggagatggaaaat
tgctgtgagctgctggaaccaaagtgtgaagccaagaagacgcttaatgggacttccact
cccccggtgacggagaagcttccccagatgctttctcagccggtcctgcagtcaatggac
agatgtctctgtccggcagaaaagggagatgcgggtcttccagggatagtcggactagca
ggagaaaagggggatacgggagacaagggggacctgggggaagccgggccgacaggaaac
ctaggacataagggagaatctggatcagaagggcaaaagggaatcgatggggagaagggt
ctgaaaggtgacctggggccaattggtccagttggtcccaagggaagcaaaggggatgtg
ggtacgcctggagctccggggctgcctgttgacaaagaatgtctcaaaggagatcagggc
cctcgaggtgacaaaggagaaaagggactggccggggtgccgggtcagccaggggagcca
ggcaaggagggcaaaaggggacggagaggaaagagtggggagcctggacccaaaggcctg
actagtccctcaggaacctctgaaggagcaagtatcaagggggagaagggcgagtcggga
gtcccggcggacaaaggggagagaggagaccccggtcagccaggtgcagagggtgccgac
ggaatgaagggacaaaaaggtgatattggcccccctggtcctcccggtcctgtgatgaca
gctcatggattaagacacctctctggatctgatgaaatgaaagagcggagccaaaaagga
gagaagggggatcagggggagcgaggaacacaaggcttcaagggaaacatagggccgcca
ggactaaaaggagatcaaggaccagcggggaaacagggcctgcctggacccactggactc
ccaggactcccaggcgagccaggatcgtcaggggagccgggggggcccgggagagatggc
ctgaaaggagaaaagggggactctgctggagtgatggcgccacagggacctccgggtccc
aagggtgagcctggagaacccggaggcggctatatgggcgacgggttgcccctaaccaga
gggtctcgcggacccaagggtgagagaggtgtcccggggttgccgggagaacacggtgaa
aagggcgaagttggagagagtgtcatgggtcttcctggcctcatgggaccccccggaaag
ccgggaatcgagggccctcgtggatcaacgggtttatctggcccccctggagctccagga
agagagggctcccctggtcgatcaggccccccgggccctcctggacccgcaggtgaacca
attgctctgccactcgtcggagacatgggagctttactcaagaatgcctgcagtgtgtgc
cagacgagagtcccgggcatgcccgggcaaagaggagagaaggggacccccggagcgcaa
ggagtcgaaggcatggtgggagaaaagggagatccgggtataagaggccctatgggtaac
cccgggaaagaagggccaaagggggtgaaaggagagagagggttcccaggcccgacagga
gacaaaggagatgaggggccttcaggagtaccagggttgcctggtgtgaccggtcgtaca
ggggccccggggctgttgggaagacctggtccattgggccagtcaggaggaaaaggagat
aaaggaaacgaaggacccacaggcagaccagggctcccagggcctccgggtgtaccctac
gtggagggcaatgggatgagcagtctgtacaagctgcagagcggtggagctcttttagga
ccccctggagctcctggtgctccgggtcccaaaggagacgaaggggttgcaggggaacca
ggggccatgggattacccgggctggaagggctacccggtgccaagggtgatattggtttg
cctggttcaccaggggcatcaggtcctccagggaagcccggaactcgtggagaactgggg
atccctggagaaccgggtgagcgggggccgctcggagagacaggattcccagggcctgag
ggaccccaaggtgttcctgggaggccgggcaaagacggaactccaggatacaagggatct
tcaggtacagcaggggacaggggatccaaaggagaacgtggcgatacagggatttctggg
gaaagaggcgtccagggcgagcgaggtcgcacaggagaccctggcccgattggacccctg
ggaccagctggccacaagggtgatcccggccctccagggcagctggagagttcaaccctc
ctgggagatcctggcgtcatggaggagctcaaaatgtttatccaaaaccaagtactgcgg
atccttgaagagaagctatcgagtgctgccatgatgcagaagacacccgcaggcatctta
ggttcacaagttcaggggcctccaggacctcctggaaaggacggatttccaggcccgcca
ggagagcatggacctcctggtcctcaaggatacaggggtcagaaaggagaacgagggcag
cttggtctagggttaccaggagatccaggatctacgggagcaccaggtcctcctgggatc
actactaaggcccctcctggttctccggggccccgcggacctcctgggacgtgtgacccc
ggcgactgcctcccgccatccttatga
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