Pleuronectes platessa (European plaice): 128454370
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Entry
128454370 CDS
T09923
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04382
Cornified envelope formation
pplt04510
Focal adhesion
pplt04512
ECM-receptor interaction
pplt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128454370
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128454370
09142 Cell motility
04820 Cytoskeleton in muscle cells
128454370
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128454370
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pplt04147
]
128454370
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128454370
Exosome [BR:
pplt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128454370
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128454370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128454370
NCBI-ProteinID:
XP_053293729
LinkDB
All DBs
Position
13:complement(11875164..11901136)
Genome browser
AA seq
1676 aa
AA seq
DB search
MWRPLLVFPLMVFAVMLSGTGAKNCVCRRKSRCHCEGVKGSRGDKGLQGVPGPTGLDGRQ
GPTGHAGPMGAKGKRGSDGHVGPKGNPGPDGKEGFAGSHGLPGIPGLQGPPGPLGAPGCN
GTNGDDGPPGIHGALGINGKPGHPGLHGPKGESRRATNSVQRPPGPPGPPGRDGKQGAPG
PRGETGPSGDPGPRGNFGFPGRPGAQGSKGHGGTGGIRGPQGPKGRPGPHGQPGPPGRIR
QFFTDLQQQIEALKGDRGDVGEKGCRGEPGDVGYGFYSKGAKGDKGQQGPEGASGRDGDP
GQGHKGNPGHQGEPGNPGTAGGTGAKGDRGPSGPPGYIHGPVPEPLKGYQGDPGPPGTPG
LPGLQGVVGFPGQEGLPGRASGFYVPGPRGHNGFPGSKGDPGEPGDIYTGLPGLEGDPGD
GGLPGDQGPPGLSEDRTNRITTGVPGMKGIRGIPGAPGYAGTFGIKGEKGESFSQCTGSR
HPGLPGPPGPQGIPGYNQGPGANGDSGFPGPKGVPGRPGPIGDSGFQGPPGQKGDSYSYH
TPGIKGEIGGPGQPGKPGANGLPGTPGLPGLKGYQGPPGDSYPSTGVERDKGFPGPPGPL
GHPGPVGFPGPVGHGHAGHPGSKGDIGVPGHQGLPGIPGQKGEPIHIHTKGLPGPPGFKG
LPGVPGNRGDHGVQGTPGLPGTPGEKGERGDLAFPGKLGIPGPKGEKGRPGLPGLPGMGL
PGQPGSQGPPGVPGLKGDSGPGKRGSPGLPGFPGEPGEQGPIGDSGNPGLPGNPGLNGNP
GLPGGKGSQGSIGPPGLPGSKDSCNCLSGPEGPPGPNGNPGLPGPNGLPGEKGNQGLAGS
GHPGPRGQPGSPGSSVAGSRGLPGQKGIMGRNGLTGKPGLRGDPGPEGLPGYGLMGLPGI
LGPPGQIGSPGPDGAKGSQGPPGMDGEPGPRGPPGTGSPTPIEIIGPPGDPGYIGPPGQT
GTHGDTGSTGPKGQRGTEGGPGGPGPKGPPGAPGIDGAACSKGSQGPAGVLGDPGFSGPP
GLKGTKGDQGNTGGPGLVGKTGPTGYKGVNGETSYSGYGLPGPAGQKGEPGSGNSEVMKG
QKGEPGISGPVGVPGSSGARGNPGPVGKNGLQGYQGAKGSDGPTGLKGHPGPHGSPGKRG
LWGVAGSTGPKGNQGRDGIPGPPGQKGETITEGTPGRRGDTGLPGPQGNPGPPGLSVTAS
PGPTGDRGLPGARGVKGPRGPACRKGACLPGLKGDRGHPGFPGRRGSPGLPGPPGPTVAG
LKGDRGHMGPSGLPGYCGPQGDQGLQGPTGARGRPGGPGPIGDSGSPGFQGPRGGTGDPG
YIPGLPGPPGHKGLPGQPGPKGEPAFGKVIYEPGPPGLPGPSGNHGSPGSTGVSGPPGHQ
GQPGIKGVRGSSPLGLPGFPGRKGDTGRAGFPGPEGRAGDPGLKGPSGLPGRGFSCHTDS
FLIARHSQSIHVPDCPHGSILIYSGYSLLFINGNEKAHGQDLGTMGSCLPRFSTMPFLFC
DTESNCRYASRNDYSYWLSTDAPMPTNMVAIAGDKLVSYISRCSVCETTSNVIAVHSQTT
RIPQCPQGWESLWTGYSFVMQTGVGADGSSQPLVSPGSCLESFRQVPFIECHGKGTCNYY
PDSYSYWLASLDPNNMFSKPVPRTVKGPALESVVSRCQVCRKPVQARPGDGRGDSF
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggccactgctcgtgttccctctgatggtgttcgctgtgatgctgtcaggcacc
ggggccaaaaattgtgtgtgcagaagaaaatccaggtgccactgtgaaggagtgaaaggc
agcaggggagacaaaggtttacaaggagttccaggtcccacaggactggacggccgtcag
ggaccaactggtcatgctgggccaatgggagcaaagggcaaaagagggtctgatggacac
gtgggaccaaaaggcaatccgggacctgatggcaaagaaggatttgctggatctcatggt
ttaccgggtatcccgggtttacaagggcctccgggacccctaggggccccaggatgcaat
ggaactaatggagatgatggacctcctggaatccatggggccctcggtattaatggaaaa
ccaggtcatccaggtctgcatggacctaagggtgaatctcggagggcaacaaattcagta
caaaggccacctgggccacctgggccacctgggagggacggaaaacagggagccccaggt
ccccgtggagagactggaccatctggggaccctggaccaaggggcaattttggctttcct
ggccgtccaggggcccagggatccaagggtcatgggggcacaggtgggatccgaggacct
caaggaccaaaggggagaccaggaccacatggacaaccggggccaccaggtcgaattagg
cagttttttactgacctacagcaacagattgaggctctaaagggagatagaggagatgtg
ggagaaaaaggctgcaggggcgaaccaggagacgtcggttatggcttctactccaaagga
gcaaagggagacaaaggacagcagggtccagaaggagcgtcagggagggatggggatcct
ggtcaaggacataagggaaaccctggccaccaaggtgagccagggaatccagggaccgca
ggaggaacgggtgcaaagggagatagaggtccttctggtccaccgggatatatacatggg
cctgtgcctgagccactcaaaggatatcagggagatcctggtccccctggaacacctggg
cttcctggtcttcagggtgttgtgggcttccctggacaagaaggactaccaggccgtgca
tctggcttttacgtgccaggcccacgcggccataatggctttccaggttccaaaggggac
cctggggagcctggggatatttatactggactcccaggtctagaaggagaccctggtgat
ggaggtcttcctggggatcaaggcccacctggactttcagaagacagaactaacaggata
accacaggtgtcccaggaatgaagggaatcagggggatacctggagccccgggatatgcc
ggaacttttggaataaaaggagagaaaggggagtcctttagtcagtgtaccggatcacga
cacccaggcttaccaggtcccccggggccacaaggcattcctggctacaatcaaggacca
ggtgccaacggagattcaggcttcccaggacctaaaggtgtacctggaagaccaggtcca
attggtgattcgggatttcaaggtcctccaggacaaaagggagactcatattcctatcac
accccagggataaagggagagataggaggcccaggacagcctggcaaacctggtgcaaac
ggtctccctgggactcctggattaccaggtctcaaaggatatcaaggccctccaggggat
tcatatccaagcactggtgtcgagagagacaagggttttccaggtccaccagggccttta
ggccatccaggaccagttggcttccctggcccagtaggacatgggcatgctggacatcca
ggaagtaagggagatattggtgtacctggccaccaagggctgcctggaattccaggccag
aaaggggaacctatccacattcacaccaaaggactccctggaccacctggatttaaaggt
ctgcctggtgttcctggaaaccggggtgatcatggagtgcaaggtaccccaggcctacca
ggcaccccaggagagaaaggagaaagaggggatctggcatttcccggaaagctcggaatt
ccagggccaaaaggtgaaaaggggcggccaggtctcccaggtcttccaggtatgggcttg
cctggtcagccaggttcacaaggccctcctggtgttccgggactgaagggggatagtggc
cctggaaaacgtgggtccccaggcctgccagggtttccgggagaacctggcgagcaggga
cctataggagattctgggaatcctggtttacctggaaacccagggctaaatggcaaccct
gggcttccaggaggaaaaggaagtcaaggctctataggaccccccggactacctggtagc
aaggattcatgtaattgtttatctggaccagagggaccaccaggaccaaatggtaatcca
ggacttccagggcccaatggcttgcctggtgagaaggggaatcaaggtttagcagggtct
ggtcatccggggccccgtggtcagcctggttcccctgggtcatcagtggcgggctcacgt
ggacttcctggacaaaaagggattatgggacgaaacggcctgactggtaaaccaggactg
agaggagacccaggaccagaaggcttaccgggatatggattgatgggattgcctggaatt
ctaggaccaccaggccaaataggttcccctggccctgatggagccaaaggttcccagggt
ccgccaggcatggatggagaacctggtcccagaggtcctccaggcactggatcaccaaca
ccaatagaaatcattggacccccaggagaccccggctatattggtccccctggtcaaact
ggtacccatggagacactggaagtactggaccaaaagggcaaagagggacagaaggagga
ccagggggtcctggaccaaaaggtcctccaggtgctccaggtattgatggagcagcgtgc
tccaaaggaagtcaaggacctgctggagtcctgggagacccaggatttagtggacctcca
ggcctgaaaggcacaaaaggagatcaaggtaacactggagggccgggtctagtcggcaaa
actggtccaacaggatacaaaggggttaatggagaaacaagttactctggatatggactc
cctggaccagccggacaaaagggtgaaccaggatcaggcaatagtgaagtgatgaaaggt
cagaaaggagaacctggcatcagtggaccagtaggtgtaccaggaagttcaggagccaga
ggaaacccaggacctgttggaaaaaacggtttacaagggtatcaaggagctaaaggttca
gatgggcctacgggacttaaaggacacccaggacctcatggttcaccaggcaaacgagga
ctgtggggtgttgctggttctacaggtccgaaaggcaaccagggcagggatgggatccct
ggaccaccaggacaaaaaggggagaccataactgaagggactcccggaagacgtggtgac
acaggtctaccaggtccccaaggaaaccctggtcctcccggcttgtctgtgacagcgagt
cctggaccgacaggagaccgaggacttccgggcgcacgtggggttaagggtcctcggggg
ccagcgtgtagaaaaggggcatgtttaccgggattaaaaggagaccgtggccatcctgga
tttcctggcagacgaggctctcctggtttacctggccctccaggtcccactgtagcaggg
ttaaaaggagacagagggcacatgggtccttcaggtctccctggttattgtggtccacaa
ggagatcaagggcttcaaggaccaactggtgcaagaggacgacctggaggcccagggcca
ataggtgactcaggttctcctggattccaaggccctcgaggtgggacgggagaccctgga
tacatcccaggcctgccaggaccaccgggacacaaaggattacctggacaacctggccct
aaaggcgaaccagcgtttggcaaagtaatatatgaaccagggcctcctggcttacccggt
ccttctggaaatcatggatccccaggaagcacgggagtgtcaggaccacctggccatcaa
ggccagccaggaatcaaaggggtgcgtggttccagcccactcggcctgccgggttttcct
ggccgcaaaggagacacaggaagagccgggtttccaggtccagaaggtagagccggagac
ccaggtctcaagggtccttcggggttgcccggtcgaggtttctcatgtcacactgacagt
ttcctgatcgcgagacacagtcaaagcatccatgtccctgactgccctcatggctccatc
ttaatctactctggatactccctcctcttcatcaatggaaatgagaaagctcatggtcag
gacctcggcacaatgggaagctgcctccctcggttctccaccatgcccttcctgttctgt
gacacggagagtaactgccgctacgcttctcgaaatgactactcgtactggttgtccact
gacgctcccatgcccaccaacatggttgccatcgcaggggataaactggtctcctacatc
agcaggtgctcagtgtgtgaaaccacctccaacgttatagccgtccacagtcagacaact
cgtatacctcaatgtccacagggatgggagtccctgtggactggatactcatttgtcatg
caaacaggcgttggtgcagatggctcctcccagcctctggtttctcctggctcatgtctg
gaaagtttccgccaagtgcccttcattgaatgtcacggcaagggaacatgtaactactat
cccgactcctacagctactggttggcctccctcgaccccaacaacatgttcagtaaacct
gttcctcggaccgtcaagggacccgctctagaaagtgttgtcagccgttgtcaagtctgt
aggaaaccagtacaggctcgtccaggcgacggacgtggggacagcttttaa
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