Pleuronectes platessa (European plaice): 128454370
Help
Entry
128454370 CDS
T09923
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04510
Focal adhesion
pplt04512
ECM-receptor interaction
pplt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128454370
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128454370
09142 Cell motility
04820 Cytoskeleton in muscle cells
128454370
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pplt04147
]
128454370
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128454370
Exosome [BR:
pplt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128454370
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128454370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128454370
NCBI-ProteinID:
XP_053293729
LinkDB
All DBs
Position
13:complement(11875164..11901136)
Genome browser
AA seq
1676 aa
AA seq
DB search
MWRPLLVFPLMVFAVMLSGTGAKNCVCRRKSRCHCEGVKGSRGDKGLQGVPGPTGLDGRQ
GPTGHAGPMGAKGKRGSDGHVGPKGNPGPDGKEGFAGSHGLPGIPGLQGPPGPLGAPGCN
GTNGDDGPPGIHGALGINGKPGHPGLHGPKGESRRATNSVQRPPGPPGPPGRDGKQGAPG
PRGETGPSGDPGPRGNFGFPGRPGAQGSKGHGGTGGIRGPQGPKGRPGPHGQPGPPGRIR
QFFTDLQQQIEALKGDRGDVGEKGCRGEPGDVGYGFYSKGAKGDKGQQGPEGASGRDGDP
GQGHKGNPGHQGEPGNPGTAGGTGAKGDRGPSGPPGYIHGPVPEPLKGYQGDPGPPGTPG
LPGLQGVVGFPGQEGLPGRASGFYVPGPRGHNGFPGSKGDPGEPGDIYTGLPGLEGDPGD
GGLPGDQGPPGLSEDRTNRITTGVPGMKGIRGIPGAPGYAGTFGIKGEKGESFSQCTGSR
HPGLPGPPGPQGIPGYNQGPGANGDSGFPGPKGVPGRPGPIGDSGFQGPPGQKGDSYSYH
TPGIKGEIGGPGQPGKPGANGLPGTPGLPGLKGYQGPPGDSYPSTGVERDKGFPGPPGPL
GHPGPVGFPGPVGHGHAGHPGSKGDIGVPGHQGLPGIPGQKGEPIHIHTKGLPGPPGFKG
LPGVPGNRGDHGVQGTPGLPGTPGEKGERGDLAFPGKLGIPGPKGEKGRPGLPGLPGMGL
PGQPGSQGPPGVPGLKGDSGPGKRGSPGLPGFPGEPGEQGPIGDSGNPGLPGNPGLNGNP
GLPGGKGSQGSIGPPGLPGSKDSCNCLSGPEGPPGPNGNPGLPGPNGLPGEKGNQGLAGS
GHPGPRGQPGSPGSSVAGSRGLPGQKGIMGRNGLTGKPGLRGDPGPEGLPGYGLMGLPGI
LGPPGQIGSPGPDGAKGSQGPPGMDGEPGPRGPPGTGSPTPIEIIGPPGDPGYIGPPGQT
GTHGDTGSTGPKGQRGTEGGPGGPGPKGPPGAPGIDGAACSKGSQGPAGVLGDPGFSGPP
GLKGTKGDQGNTGGPGLVGKTGPTGYKGVNGETSYSGYGLPGPAGQKGEPGSGNSEVMKG
QKGEPGISGPVGVPGSSGARGNPGPVGKNGLQGYQGAKGSDGPTGLKGHPGPHGSPGKRG
LWGVAGSTGPKGNQGRDGIPGPPGQKGETITEGTPGRRGDTGLPGPQGNPGPPGLSVTAS
PGPTGDRGLPGARGVKGPRGPACRKGACLPGLKGDRGHPGFPGRRGSPGLPGPPGPTVAG
LKGDRGHMGPSGLPGYCGPQGDQGLQGPTGARGRPGGPGPIGDSGSPGFQGPRGGTGDPG
YIPGLPGPPGHKGLPGQPGPKGEPAFGKVIYEPGPPGLPGPSGNHGSPGSTGVSGPPGHQ
GQPGIKGVRGSSPLGLPGFPGRKGDTGRAGFPGPEGRAGDPGLKGPSGLPGRGFSCHTDS
FLIARHSQSIHVPDCPHGSILIYSGYSLLFINGNEKAHGQDLGTMGSCLPRFSTMPFLFC
DTESNCRYASRNDYSYWLSTDAPMPTNMVAIAGDKLVSYISRCSVCETTSNVIAVHSQTT
RIPQCPQGWESLWTGYSFVMQTGVGADGSSQPLVSPGSCLESFRQVPFIECHGKGTCNYY
PDSYSYWLASLDPNNMFSKPVPRTVKGPALESVVSRCQVCRKPVQARPGDGRGDSF
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggccactgctcgtgttccctctgatggtgttcgctgtgatgctgtcaggcacc
ggggccaaaaattgtgtgtgcagaagaaaatccaggtgccactgtgaaggagtgaaaggc
agcaggggagacaaaggtttacaaggagttccaggtcccacaggactggacggccgtcag
ggaccaactggtcatgctgggccaatgggagcaaagggcaaaagagggtctgatggacac
gtgggaccaaaaggcaatccgggacctgatggcaaagaaggatttgctggatctcatggt
ttaccgggtatcccgggtttacaagggcctccgggacccctaggggccccaggatgcaat
ggaactaatggagatgatggacctcctggaatccatggggccctcggtattaatggaaaa
ccaggtcatccaggtctgcatggacctaagggtgaatctcggagggcaacaaattcagta
caaaggccacctgggccacctgggccacctgggagggacggaaaacagggagccccaggt
ccccgtggagagactggaccatctggggaccctggaccaaggggcaattttggctttcct
ggccgtccaggggcccagggatccaagggtcatgggggcacaggtgggatccgaggacct
caaggaccaaaggggagaccaggaccacatggacaaccggggccaccaggtcgaattagg
cagttttttactgacctacagcaacagattgaggctctaaagggagatagaggagatgtg
ggagaaaaaggctgcaggggcgaaccaggagacgtcggttatggcttctactccaaagga
gcaaagggagacaaaggacagcagggtccagaaggagcgtcagggagggatggggatcct
ggtcaaggacataagggaaaccctggccaccaaggtgagccagggaatccagggaccgca
ggaggaacgggtgcaaagggagatagaggtccttctggtccaccgggatatatacatggg
cctgtgcctgagccactcaaaggatatcagggagatcctggtccccctggaacacctggg
cttcctggtcttcagggtgttgtgggcttccctggacaagaaggactaccaggccgtgca
tctggcttttacgtgccaggcccacgcggccataatggctttccaggttccaaaggggac
cctggggagcctggggatatttatactggactcccaggtctagaaggagaccctggtgat
ggaggtcttcctggggatcaaggcccacctggactttcagaagacagaactaacaggata
accacaggtgtcccaggaatgaagggaatcagggggatacctggagccccgggatatgcc
ggaacttttggaataaaaggagagaaaggggagtcctttagtcagtgtaccggatcacga
cacccaggcttaccaggtcccccggggccacaaggcattcctggctacaatcaaggacca
ggtgccaacggagattcaggcttcccaggacctaaaggtgtacctggaagaccaggtcca
attggtgattcgggatttcaaggtcctccaggacaaaagggagactcatattcctatcac
accccagggataaagggagagataggaggcccaggacagcctggcaaacctggtgcaaac
ggtctccctgggactcctggattaccaggtctcaaaggatatcaaggccctccaggggat
tcatatccaagcactggtgtcgagagagacaagggttttccaggtccaccagggccttta
ggccatccaggaccagttggcttccctggcccagtaggacatgggcatgctggacatcca
ggaagtaagggagatattggtgtacctggccaccaagggctgcctggaattccaggccag
aaaggggaacctatccacattcacaccaaaggactccctggaccacctggatttaaaggt
ctgcctggtgttcctggaaaccggggtgatcatggagtgcaaggtaccccaggcctacca
ggcaccccaggagagaaaggagaaagaggggatctggcatttcccggaaagctcggaatt
ccagggccaaaaggtgaaaaggggcggccaggtctcccaggtcttccaggtatgggcttg
cctggtcagccaggttcacaaggccctcctggtgttccgggactgaagggggatagtggc
cctggaaaacgtgggtccccaggcctgccagggtttccgggagaacctggcgagcaggga
cctataggagattctgggaatcctggtttacctggaaacccagggctaaatggcaaccct
gggcttccaggaggaaaaggaagtcaaggctctataggaccccccggactacctggtagc
aaggattcatgtaattgtttatctggaccagagggaccaccaggaccaaatggtaatcca
ggacttccagggcccaatggcttgcctggtgagaaggggaatcaaggtttagcagggtct
ggtcatccggggccccgtggtcagcctggttcccctgggtcatcagtggcgggctcacgt
ggacttcctggacaaaaagggattatgggacgaaacggcctgactggtaaaccaggactg
agaggagacccaggaccagaaggcttaccgggatatggattgatgggattgcctggaatt
ctaggaccaccaggccaaataggttcccctggccctgatggagccaaaggttcccagggt
ccgccaggcatggatggagaacctggtcccagaggtcctccaggcactggatcaccaaca
ccaatagaaatcattggacccccaggagaccccggctatattggtccccctggtcaaact
ggtacccatggagacactggaagtactggaccaaaagggcaaagagggacagaaggagga
ccagggggtcctggaccaaaaggtcctccaggtgctccaggtattgatggagcagcgtgc
tccaaaggaagtcaaggacctgctggagtcctgggagacccaggatttagtggacctcca
ggcctgaaaggcacaaaaggagatcaaggtaacactggagggccgggtctagtcggcaaa
actggtccaacaggatacaaaggggttaatggagaaacaagttactctggatatggactc
cctggaccagccggacaaaagggtgaaccaggatcaggcaatagtgaagtgatgaaaggt
cagaaaggagaacctggcatcagtggaccagtaggtgtaccaggaagttcaggagccaga
ggaaacccaggacctgttggaaaaaacggtttacaagggtatcaaggagctaaaggttca
gatgggcctacgggacttaaaggacacccaggacctcatggttcaccaggcaaacgagga
ctgtggggtgttgctggttctacaggtccgaaaggcaaccagggcagggatgggatccct
ggaccaccaggacaaaaaggggagaccataactgaagggactcccggaagacgtggtgac
acaggtctaccaggtccccaaggaaaccctggtcctcccggcttgtctgtgacagcgagt
cctggaccgacaggagaccgaggacttccgggcgcacgtggggttaagggtcctcggggg
ccagcgtgtagaaaaggggcatgtttaccgggattaaaaggagaccgtggccatcctgga
tttcctggcagacgaggctctcctggtttacctggccctccaggtcccactgtagcaggg
ttaaaaggagacagagggcacatgggtccttcaggtctccctggttattgtggtccacaa
ggagatcaagggcttcaaggaccaactggtgcaagaggacgacctggaggcccagggcca
ataggtgactcaggttctcctggattccaaggccctcgaggtgggacgggagaccctgga
tacatcccaggcctgccaggaccaccgggacacaaaggattacctggacaacctggccct
aaaggcgaaccagcgtttggcaaagtaatatatgaaccagggcctcctggcttacccggt
ccttctggaaatcatggatccccaggaagcacgggagtgtcaggaccacctggccatcaa
ggccagccaggaatcaaaggggtgcgtggttccagcccactcggcctgccgggttttcct
ggccgcaaaggagacacaggaagagccgggtttccaggtccagaaggtagagccggagac
ccaggtctcaagggtccttcggggttgcccggtcgaggtttctcatgtcacactgacagt
ttcctgatcgcgagacacagtcaaagcatccatgtccctgactgccctcatggctccatc
ttaatctactctggatactccctcctcttcatcaatggaaatgagaaagctcatggtcag
gacctcggcacaatgggaagctgcctccctcggttctccaccatgcccttcctgttctgt
gacacggagagtaactgccgctacgcttctcgaaatgactactcgtactggttgtccact
gacgctcccatgcccaccaacatggttgccatcgcaggggataaactggtctcctacatc
agcaggtgctcagtgtgtgaaaccacctccaacgttatagccgtccacagtcagacaact
cgtatacctcaatgtccacagggatgggagtccctgtggactggatactcatttgtcatg
caaacaggcgttggtgcagatggctcctcccagcctctggtttctcctggctcatgtctg
gaaagtttccgccaagtgcccttcattgaatgtcacggcaagggaacatgtaactactat
cccgactcctacagctactggttggcctccctcgaccccaacaacatgttcagtaaacct
gttcctcggaccgtcaagggacccgctctagaaagtgttgtcagccgttgtcaagtctgt
aggaaaccagtacaggctcgtccaggcgacggacgtggggacagcttttaa
DBGET
integrated database retrieval system