Pleuronectes platessa (European plaice): 128454845
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Entry
128454845 CDS
T09923
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128454845 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128454845 (smg7)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128454845 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
128454845 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
128454845
NCBI-ProteinID:
XP_053294385
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All DBs
Position
13:431148..445379
Genome browser
AA seq
1185 aa
AA seq
DB search
MTLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKAEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCNVFNVDLPCRV
KSSQLGIISNKQSSSSIVSPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV
PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREEGKT
KWSVSDFIKAFIKFHGHVYLSKSLDKVDALRGKLEEQFQRLILQKAFSSQQLVHITVINL
FELHHLRDLTCDGSEPAFSSEQQVSWFQLLGLFMSFLGVMCSRVLLNKTRGEDIMGECPL
PAIKVSLDWIKLRPSVFHEAAVDERQHVWPWLVSILNSFQPQEHDVSCPSVTPLPEEFEL
QGFLALRPALRSLDFTKGHQGVLVDRDGPPVHTRHQRLISLGKWVADNQPGLIQCRESED
GLLLFITDIPEQAIEEPQEREAPVLQDSSNGEQMPNDGGHSGLKSVLSAGKTQSSWPDGS
DRPVVTFKENIKPREQSREMMRNPQQKDAGKERRDFGKGNGAAGKGELKRDGKRKSEPKK
TGHEKTTEAVKQVKAQTELRKTPVSEVKKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPG
FPPSAYVMPPPVAFPGLQVNPGFTFSTGVSVPGPFLQPAAHSQAGSQVQAGKQSHIPYSQ
QRPSGPGPGQGPGSMNQSPSPGQQPLSQLPSQHALQQSVQLQVQAMSQQQQSPTRPVQQV
GIGKSPPHLPGLQQYMQVQDQPAQIWNQAQAALQKMNPMMSMKQQPSQTFFMASPDPLKL
YEHQLQPQLSNMDKKIKFPDAKMQDFYWEPSYRMGDGLAVMADRMKRPPPGGICSEQDGS
TGPRGPPFEDKSSPLLPPDLLKSLADFEEEEELVFSKPPDFFQALAAPLSSAPGPNMFLS
NQTRMESGPEGVSQSSSLLPISGFPMQEYNQNSIFSQAYGKTLPPSSKPDAPMMHQEPSL
YSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAMPFSNFGPIGTPDS
RDRRVVDRWKADKTGAVSGFGLDYLPAAASSAASDTSWHQGAPSGSSWTNQESPMEESSS
TVLLDSLKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctgtgcccagtacctgagacaggctgaggccctgaaggctgacatgacagat
tctaagcttggggcagcagaggtgtggacgtctcgtcaggccctgcaggacctgtaccag
aaaatgctggtgactgacctggagtacgctctggacaagaaggcggagcaagacctgtgg
aatcatgcttttaagaaccagatcaccaccctgcagagccaggccaagaaccgagccaac
cccaaccgcagtgaggtccaggccaacctgtcgctgtttctggaggcagccagtggcttc
tacacacagttgctgcaggagctgtgcaatgtcttcaacgtggacctgccgtgtcgcgtc
aaatcgtctcagctcggcatcatcagcaataaacagagcagcagcagcatcgtcagcccc
cagcccagctcctgctcctacatctgccagcactgcctcgtccacctcggagacatcgcc
cgttaccgtaaccagaccagccaggcggagtcgtactaccgacacgcagctcagctggtt
ccatcgaacggtcagccctacaaccagctggccatcctggcctcttctaaaggagaccac
ctcaccaccatcttctactactgccgcagtatcgcagtcaagttccccttcccagcagcc
tccaccaacctgcagaaggccctgtccaaggccctggagagtcgtgaagaggggaaaacc
aagtggagtgtgtcagatttcatcaaggccttcatcaagtttcacggccatgtctacctg
agtaagagtctggacaaagtggacgctctgagggggaaactggaggagcagtttcagcgg
ctgatcctgcagaaagccttcagttctcagcagctggtccacatcacagtcatcaacctg
tttgagctccaccacctcagggacctgacgtgtgacggcagcgagccggccttcagcagc
gagcagcaggtcagctggttccagctgctcggactcttcatgtccttcctgggcgtcatg
tgcagccgtgttctgctcaacaagaccaggggggaggacatcatgggggagtgtcctctg
ccggccatcaaagtttccctggactggatcaaactgagaccgagcgtcttccacgaggcc
gcagtcgatgagaggcagcatgtctggccctggctcgtctccatcctcaacagtttccag
ccccaggagcacgacgtgtcctgtccctcagtcacacccctgccggaggagtttgagctg
cagggtttcttggctctccggccggctctgaggtctctggacttcaccaaaggtcatcag
ggagtcctggtggacagagacggcccgccggtccacactcgacaccagagactcatcagt
ctgggtaaatgggtggcagacaaccagccagggctgattcagtgcagagagagtgaggac
ggtctcctcctcttcatcactgacattccagagcaggccatcgaggagccgcaggagagg
gaggcaccggtgctgcaggactcgtccaacggggaacagatgcctaacgacggaggacac
tccggcctgaagtcggtgctgtcggcggggaagacgcagagctcatggcctgatggtagt
gaccgacctgtcgtcaccttcaaggagaacatcaaaccacgagagcagagccgcgaaatg
atgaggaaccctcagcagaaggacgccggcaaagagcgcagagacttcggtaaaggcaac
ggggcggctgggaaaggagagctgaagagggacgggaagaggaagagcgagccgaagaaa
accggccacgagaaaacgactgaggccgtgaaacaggtgaaggctcagacggagctgagg
aagactccggtgtccgaggtgaagaagactcctgtcactcaaactcaaaccacctgctcc
tcccagttcatccccatccaccatcctggagccttcccccccctgcccagcagacccggt
ttcccgccctcagcctacgtgatgcctcctccggtggcgttcccggggctccaggtgaat
ccgggcttcaccttctccaccggcgtgtccgtccccgggccgttcctccagccagctgcc
cactctcaggctggctcacaggttcaggctggaaagcagtcccacattccctacagtcag
cagaggccctccggtccagggccgggtcagggccctgggtccatgaaccagagcccctcc
ccgggtcagcagcccctgtcccagctgccctcccagcatgccttgcagcagtctgtccag
ctgcaggtgcaggccatgagccagcagcagcagtctcccaccagaccggtgcagcaggtc
gggatcgggaagagtccgcctcacctcccaggactgcaacagtacatgcaggtccaggac
cagccggctcagatttggaaccaggcacaggcggccctgcagaagatgaatcccatgatg
tccatgaagcagcagccgtcacagacgttcttcatggcgtctccggatcctctcaaactg
tacgagcaccagctgcagccccagctgtccaacatggacaagaagatcaagttccccgac
gccaagatgcaggacttctactgggagccgtcctacaggatgggggacggccttgccgtg
atggcagacaggatgaagaggcctccaccgggtgggatctgctcagagcaggacggctcc
accgggccccgggggcccccctttgaggacaagagctcgcctctcctgcctcctgacctg
ttaaaatctctggcagattttgaggaggaggaggagctcgtcttttctaagcctcctgat
ttcttccaggccttggctgctcctcttagttctgctcctggaccaaacatgtttctgtcc
aaccagaccaggatggagagcggccccgagggcgtcagccaatcatcttctcttctgccc
atctctgggttccccatgcaggagtacaaccagaacagcatcttcagccaggcgtacggc
aagaccctgccgcccagctccaagcctgacgctcccatgatgcaccaggagccgtccctc
tactccctgtttgaagggacgccgtggtccccctccctccctgccagctcagaccactcc
accccggccagccaatcccctcactcctccaaccccagcagcctgccgtcctcccccccc
acacacaaccacggagctatgcccttctctaacttcgggcccatcggcactccggacagt
cgggaccgccgggtggtggaccgctggaaggccgacaagaccggagccgtcagcggcttc
ggtctggactacctgccggctgctgcttcctctgcagcttcagacaccagctggcaccag
ggtgcaccgagcggcagctcctggaccaatcaggagtctccaatggaggagtcgtcttcc
accgtgctgctcgacagcctcaagtccatctggtccagctccatgatgcagccgggcccg
tcggcgctggagcagctcctcctgcagcagaagcagaagcagcagcgaggtcacggcgcc
atgaacccgcctcactga
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