Pleuronectes platessa (European plaice): 128454951
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Entry
128454951 CDS
T09923
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03030
DNA replication
pplt03410
Base excision repair
pplt03420
Nucleotide excision repair
pplt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128454951 (lig1)
03410 Base excision repair
128454951 (lig1)
03420 Nucleotide excision repair
128454951 (lig1)
03430 Mismatch repair
128454951 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pplt03032
]
128454951 (lig1)
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128454951 (lig1)
Enzymes [BR:
pplt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128454951 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
128454951 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
128454951 (lig1)
DNA replication proteins [BR:
pplt03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
128454951 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
128454951 (lig1)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
128454951 (lig1)
NER (nucleotide excision repair)
Other NER factors
128454951 (lig1)
MMR (mismatch excision repair)
Other MMR factors
128454951 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
128454951
NCBI-ProteinID:
XP_053294537
LinkDB
All DBs
Position
13:3129428..3172603
Genome browser
AA seq
861 aa
AA seq
DB search
MPVLLTCAARKMFPKRKLDESRSGSESQKEEAEPKEERGQQSKRPRMEPAADGAGDAGDP
MEEGAKEEDAEKPVTAANSRDEEVENKKKKKEDGESGDEKEKKAEGAGKKSEAKEKSDDG
KGPATAKKEVVEKETREGEESPKSQTAKEQRDKEPAKKAPISSFFAPRKVAVKTEKVEKS
DEEKKTSPERKSSAEESKDTKSESTSGQTEYDPSRPGYHPVDHACWKHGQRVPYLAVART
FEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGIGETILM
KAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIAVMS
GNSAMNKKIDIIKGLFVACRFAEARYIVRSLAGKLRIGLAEQSVLSALTLAVCLTPPGQD
FPPAVIDAGKGMSAESKKAWIEEKSLILKQTYCEMPNYDILLPVLLKEGIDQLPNHCKLT
PGVPLRPMLAHPTKGVGEVLKRFDEAAFTCEYKYDGERAQIHILESGEVKVFSRSQEDNT
SKYPDIISRIPKMKKDSVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQV
CVYAFDLLYLNGESLVRQPLCRRRALLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSV
RDSCEGLMVKTLKKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYMGKGKRAGSY
GGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRFDQSAEPEVW
LDAVQVWEVKCADLSLSPVYKAAMGLVDPVKGISLRFPRFLRIRDDKKPEDATSGAQIAD
LYKKQQQIQNQGDKVDPEDYY
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttcttctgacgtgtgcagcgagaaagatgttccccaagaggaagctggacgag
agccggagcggcagcgagagtcagaaggaggaggcggagccaaaggaggagcggggtcag
cagagtaaacgacctcgcatggagcccgccgccgacggtgcaggggacgccggtgacccc
atggaggagggcgcaaaggaagaggacgctgagaagccagtgaccgcagctaacagccgg
gatgaagaggtggagaacaagaagaagaagaaagaggacggagagagcggcgatgagaaa
gaaaagaaagctgagggagcgggaaagaaaagtgaagcaaaggagaagagtgatgatggg
aaaggtcctgccactgccaagaaggaggtggttgaaaaggagacgcgagagggagaggag
agcccaaaaagtcaaacagcgaaagagcagagagataaggagccggccaagaaagccccc
atcagcagtttctttgctcccaggaaagttgcagtgaagacggagaaagtggagaagagt
gacgaagagaaaaagacaagcccggagaggaagagttcagccgaggagagtaaagacaca
aaaagtgagtcaacttctggacaaacagagtacgatccgtccaggcccggatatcatccc
gtggaccacgcctgctggaagcacggccagagagtcccctacttggctgtggctcgcacc
tttgagaagattgaagaggactctggcaggctgagaaacatcgagactctgtccaacctg
ctccgctcggtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgtttg
aaccagctgggtcctgcctacctggggatggagctcggcatcggggagacaatcctgatg
aaagctgttgctcaagcaactggtcgacaattggacaaaattaaagccgaggcgcaggag
aagggagacctgggcctcgtggccgagagctcccgcagcaaccagcgcatgatgttccag
ccggccagtctgacagcagggggcgtgttcaggaaattgaaggagattgccgtcatgagc
gggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgc
ttcgccgaggcccgctacatagtcaggtccctggctgggaagctgaggataggcctggct
gagcagagcgtcctatcagcactcactctggctgtgtgcttgaccccacctggacaagat
ttccctcccgctgtgatcgatgccgggaaggggatgagcgctgagagcaagaaggcctgg
atcgaagagaagagtctcatcctcaaacagacttattgcgagatgcccaattacgacatc
ctcctccccgtgctcctgaaggagggcatagaccagctgcccaatcactgcaagctcact
ccaggtgtgccgctgaggcccatgctggctcaccccacaaagggcgttggcgaggtgctg
aagaggtttgacgaggcggcgttcacctgcgagtacaagtacgacggcgagcgtgcacag
attcacattctggagagcggcgaggtgaaggtgttcagccgcagccaggaagacaacacc
agcaaataccctgatatcatctctcgcattcccaagatgaagaaggactccgtggtgtcc
tgcgtcctggactcggaggccgtcgcctgggaccgagagaagaagcagatccagcccttc
caggtcctcaccacccgtaagagaaaggacgtggatgcctcggagatcaaagtgcaggtg
tgcgtgtacgccttcgacctcctctatctcaacggcgagtccctggtgcgacagccgttg
tgtcggcgtcgggctctgctgaaggaaagcttctccgaggtggagggagagtttgtgttc
gcccgatccatcgactccgacaacaccgacgccatcgcagagttcctggagcagtctgtt
cgagattcctgtgagggcctcatggtgaagactctgaagaaggatgccacctatgaaatt
gccaagcgctctcataattggctcaagctgaagaaggactacctggagggggtgggcgac
acggtggacctgtgtgtgatcggggcctacatggggaaaggcaagagggcgggctcctac
gggggcttcctgctggcgtgctacgacgaggagaacgaggagttccagtccgtgtgcaag
atcggcaccggtttcaaggatgaagatctggagcaacattacaagttcttaaaggaacac
attctgcccaaacctcgtgcctactaccgcttcgaccaatcagcggagcccgaggtgtgg
ctggacgccgtgcaggtctgggaggtgaagtgcgccgacctgtcgctgtcgcccgtctac
aaggccgccatgggactggtggatccggtgaagggcatctcactgcggttccctcgcttc
ctccggatcagagacgacaaaaaaccagaggacgccacgtctggagctcagatcgctgat
ttgtacaagaagcagcagcagatccagaaccagggggacaaagtcgacccagaggactac
tactga
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