Pleuronectes platessa (European plaice): 128456456
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Entry
128456456 CDS
T09923
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pplt04147
]
128456456 (col18a1a)
00535 Proteoglycans [BR:
pplt00535
]
128456456 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128456456 (col18a1a)
Exosome [BR:
pplt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128456456 (col18a1a)
Proteoglycans [BR:
pplt00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128456456 (col18a1a)
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128456456 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128456456
NCBI-ProteinID:
XP_053296612
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All DBs
Position
14:21879115..21944651
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AA seq
1333 aa
AA seq
DB search
MRCCPWVQRLVGCVLLLVRPAASQWPEDTGVSLLQLIGDPPPDEITRVIGPDNSSRYVFG
PDANTGQLARAHLPSPFHRDFSLIFNLKPTSDKGGVVFSVTDDSQKIMYVGVKLSPVRGN
DQSIILYYTEPGSQRSYEAARFPVLSMTNTWTRFAIAVRDDKVMLYLNCVADPWVKRMER
SPDDMELDTGAGVFVGQAGGADPDKFLGEIEELRVVGDPRAAETYCDEDEDGDDSDMASG
DGSGDDEPRPTRPAVENRRWTTAPPSSGPIPMPPLSEKEETSVSGGTGAAGAKGERGGRG
DRGEKGDRGPFGPKGESGSGSISRGGARGEKGEPGEKGLKGSAGFGYQGKKGDAGIAGPP
GPPGPPGAATEGSLSSDGSVLSTVPGPRGPAGPQGVAGSPGPAGADGEAGDPGEDGKTGP
EGPPGFPGTPGDPGTKGEKGDRGEGQPGLRGAPGLPGPPGTGSRSTFVDMEGSGFPDLES
IRGLPGLPGVPGPPGPPGPATARTALSSGAFGPPGKDGAPGQPGLSGLPGTDGLPGAAGP
KGEKGDPAELGLPGVAGEKGAQGDPGLPGRAGESGLAGLPGPMGPVGRPGPPGPPGPSYR
VGFDDMEGSGGGFSNGLPGVRGPEGRQGSPGFPGIPGKPGLPGMPGQKGSEGSAGREGRP
GLDGFQGPQGPKGDAGDKGDRGDPGRDGTGLQGPPGPPGPPGQIIYSTSGKFDVGSAGPK
GGSGLPGQAGFPGPIGPKGDLGDQGPPGFGLKGEKGEPGLAIGPDGNLLYLEGLSGMKGD
RGPSGPVGPPGQYGPPGIKGEMGMPGRPGRPGVNGYKGEKGDATVGSGYSYPGVSGPPGL
PGPPGPPGPPTPLDRFNRYDDASRNYQVKGEKGERGDRGVQGIPGTASNLDIYTLKNELK
GQPGDPGVKGEKGEPSGGYYDSRFGGVQGQPGPPGKPGLPGPKGDSIIGPSGPQGPQGSP
GIGYDGRQGPPGPPGPPGPTSSQPGPYRPNHAVSIPGPPGPPGPPGSSGSSSGITVLRSY
DTMIASARRQEEGSLIYILDRSDLYLRVREGLRQVMLGDYRPFFRDLENEVAEVQPPPVI
HYPGGSAIRPIEPPPQPAVDPVYPPRYDPRFPDPRQTGQTDGRLPPQSTDNRYPVTPQRR
PSPDLPQPGGHVDGSGSGLHIISLNAPYTGNMRGIRGADFLCFQQARAVGLKGTYRAFLS
SKLQDLHTIVRRSDRESLPILNLKDQVLFSSWESMFGDKASKMRENVPIYSFDGRDIIRD
SAWPEKMVWHGSSNKGHRQTDHYCETWRAGDHAVTGLASSLQSGHLLQQTSSSCSGSYIV
LCIENAFVSPSKK
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgttgtccgtgggtgcagcgcctcgtcggttgcgtcctgctcctcgtccgtcca
gcggcgtcgcagtggccagaagacactggagtctccctattgcagctgatcggggatcct
cctcccgatgagatcacccgagtcattggacccgacaacagctccagatacgtctttggc
cccgatgccaacaccggccagctggcacgcgcccacctgccgagcccgttccaccgagac
ttctccctcatcttcaacctgaagcccacctccgacaagggcggcgtcgtcttctccgtc
acagacgactcgcagaagatcatgtacgtgggtgtcaagctgtcgcccgtccggggcaac
gaccagagcatcatcctgtactacacagagcccggctcgcagcggtcctatgaggcggcc
aggttccccgtgctctccatgaccaacacctggacccggttcgccatcgctgtgagggac
gacaaggtgatgctgtacctcaactgtgtcgcggatccctgggtgaagcgcatggagagg
tccccggacgacatggagctggacaccggtgctggggtgttcgtcgggcaagctgggggg
gcggaccccgataagttcctgggggagatcgaggagctgagggtggtgggagacccccga
gctgctgagacatactgtgacgaggacgaggacggggacgactccgatatggcttcaggt
gatggaagcggcgacgatgaaccgagacccaccagaccggctgtggagaatcgcagatgg
acgaccgcccccccgtcctctgggcccattccgatgccgccgctcagtgagaaagaggag
acttctgtttcaggagggacgggagcagctggggctaaaggagagagaggtggccgcggg
gacagaggagagaaaggagaccggggaccgttcggcccgaagggagaatcaggatccggc
tccatctctcgggggggagcccgtggagagaagggagaacctggagaaaaaggattgaag
ggcagcgcaggatttggctaccaaggaaagaagggggacgccggcatcgctgggcccccc
ggcccccccggccctccaggagctgcaactgaaggttcacttagcagcgatggctcagta
ctttcgacagtgcctggaccccgaggaccagccggaccacaaggtgttgcaggctccccg
ggaccagcaggagctgatggagaggctggtgatcctggtgaggatggaaaaactggtcct
gagggacctccaggcttcccaggaactccaggtgatcccggaaccaaaggagagaaggga
gaccgtggagagggtcaaccgggccttaggggggccccaggacttcccggaccccctgga
acaggatccagatctacctttgtggacatggaaggttcaggtttccccgacctggaatcc
attcggggactacctgggctcccaggtgtccctggtcctcccgggcctcctggtcctgct
acagcccgcacagcattgagttctggagcctttggtccaccaggaaaggacggggcgcct
ggtcaacctggtttgtctggtttacccggtactgacggcctcccaggagctgctggtccc
aagggagaaaagggtgatccagccgagctgggtcttccaggagtcgctggagagaaggga
gctcagggagaccctggtttaccaggacgtgcaggagaatccggtctcgctggtttacct
ggacccatgggaccggtggggcgacccgggccccccggacctcctggaccaagttatcgt
gttggatttgatgacatggaaggatcaggaggaggtttcagcaatggacttcctggtgtc
agaggacctgaaggaagacagggttctcctggtttccctggtattcctggtaaacctggg
ttgcctgggatgccgggtcagaagggcagtgaaggttctgcaggacgagaggggcgacct
gggctggacggcttccagggacctcagggaccaaagggagacgccggtgacaaaggcgac
aggggagacccaggtcgagatggaaccggactccaaggtccaccaggcccacctggaccc
cccggacaaatcatctactctacatctggaaagtttgacgtcggcagtgctgggcccaag
ggtggatctggtttacctggtcaagctggattccctggtcctattggaccaaagggggac
ttaggtgaccaaggacctcctggctttgggttgaagggagagaaaggtgagcccggcttg
gcgatcggacctgatggaaatctcctgtatctggaagggttgagtggcatgaagggagac
agaggaccctctggtcccgttggacctcctggccagtacgggcctcctggaataaagggt
gaaatgggaatgcctggaagacctggtcgtcctggtgttaatggatacaagggagagaaa
ggagacgcgacagttggttcaggctacagttaccctggagtctctggacctccaggactg
cccggaccacctggacccccagggccacccactcctctggaccgcttcaaccgatacgat
gacgcttcaaggaattaccaagttaaaggggaaaaaggagaacgtggtgaccgaggagtt
cagggaatcccaggaacagcatctaatcttgatatctacacattgaagaatgaactgaag
ggacagcctggagatccaggtgtgaagggagaaaagggagagcccagtggcggttactat
gactcacgttttggaggcgtgcagggtcaaccggggcctcccggcaaaccgggcctaccg
ggtcccaagggagattccataatcggcccatctgggccccagggaccacaagggtcacca
ggcattggttacgatggacgtcaaggtcctccaggaccacctggacctccagggcccaca
agctcgcagcctggaccatatcggcccaatcacgccgtcagtatccctggacctcctggt
cctcctggcccacctggaagttctggctcctcctctggtatcacagttttgaggtcgtat
gacacaatgattgcttcagccagacgtcaggaagagggcagcctcatctacatcctcgac
agatcagacctgtatctcagagtacgagaaggactgcgccaagtcatgctcggagattat
cgaccattcttcagagatctggagaacgaggtggcagaggtccagcctccgcctgtgatc
cactacccgggcggctcagccatacgtcccattgagcctccacctcaaccagccgtagac
cccgtgtaccccccacgctacgatcccaggttcccagaccccagacagacgggtcagacc
gatggaaggttacccccccagagcactgacaacagatacccagtcactccacagagacga
cccagcccggatctcccacagcctgggggccatgtggacggatcaggatcaggactacac
atcatctccttgaacgccccttatactggtaacatgcgagggatccgcggagccgacttc
ctgtgcttccagcaggcccgtgctgtgggcctgaagggaacttacagagcgttcctgtcc
tccaagctgcaagacctccacaccatcgtccgcaggtcggacagggagagcctccccatc
ctgaacctgaaggaccaagtgttgttcagcagttgggagtcgatgtttggagacaaggcg
agcaaaatgagggagaatgtgccgatctactcgttcgacggtagagatatcatcagggac
agtgcatggccagagaaaatggtttggcatggatcgagcaacaaaggccacaggcaaaca
gatcactactgtgaaacatggcgagcaggcgaccacgccgtcaccggtctggcttcctca
ttacagagcggccacctcctgcagcagacctccagcagctgctccggctcttacatcgtc
ctctgcatcgagaacgcctttgtctcaccctccaaaaaataa
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integrated database retrieval system
