Pleuronectes platessa (European plaice): 128456773
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Entry
128456773 CDS
T09923
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128456773 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128456773 (pcf11)
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128456773 (pcf11)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128456773 (pcf11)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128456773 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
PCF11_RFEG_rpt
SHOCT
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
128456773
NCBI-ProteinID:
XP_053297095
LinkDB
All DBs
Position
15:764533..776279
Genome browser
AA seq
1562 aa
AA seq
DB search
MEDSAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLTFAKDIVAIIEAQISKAPAA
EKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEKVEENTRKSLFKLRSTWDEVFPL
KKLYAVDVRVNSVDPAWPIKPLPPTVNASIHVNPKFLKQSEEASSPQPAPSQPPAPLSAA
VVAPAPQPVPAVSQSSVTQEQLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAGGFTLP
TAPPASSPAAPTMTPKALSQNAPVVRPWIPPQTQSDTKTTTRDPRLNRIGPPAASQTKEQ
PAGKKDSLQKGSPALTPEKRQPEKSFRPEKTRTPRKETSEEKIKSKSLSPMTKSIQSKNK
QAEAEGQKSSDGSKKDPRLRKRTQVKSGESKDEELKEKKRCNDKKEREEAVLGAELQRFS
KGKLANGFVIKHEREEAEKVEFKSGGNARTHARKRTRSRSRSPTSSPKRKDRRSPKGRAR
SSSLSPSPSHKPVKPRRVRVDEPLHGKPGRDDRVTLKKSQSESRRSKRPQDDRHSESRDS
HSPRSHDGSGKETKEAPHRWRSGWQENKHLKLPDDASMKPGPQRHKPYNPPTRPPTPRTL
KHRLSVDANLQIPEALNAASKKDLLRRASKRLESGEISQEEFLNVAHQLKHFFQYQEEKL
QRSESWDGSGNFAKKQPLLAPPASGPRPDAMDAAELSYYEHKSKLRKTQVTHRVAGEEWE
GEENVEDVDVTDVGEKTGGGRSIGGHPPPHKYSRAPRDRQGERRSKEREESRPPLGPMIE
EYNHGKEFPTLKSLPGLRFRRRADPRDSSEREWNSPLTERQREEQKSGYDAPRRYTPSVD
PRHPDPRRPEGPLPSGTVVHRNCPSPTGPDAPIPRFERERLSPLHQKDSAEMSPVPRFES
PNSEHSDEGPLKPDVPPPQPPLPPILKAPARVGPLSSVRQQSSSPGHTPPHEAGHPQSRY
DGPEHIAPPRPHPLGWYDDSSQFEGPQPQGPVRFDGGRPHHNIPERFDGPDGTHLPHGPM
RGGDGMGRFDVHPHPQGPGRFDGAMGQQPPVRFVGQGPGHFEGPMQHFEPPRRFDNNMAP
GPMGFQQQQALRFEGPPNQMGPMRFDGPNHGYDMPNVPHQGGHTHFEGPPGHQGPPRFPP
QHNMQPPMRPIAPPIYDNPMNPQQNFNMGPQCFPEPMNPQFPAGPMAFPAQTVNFNLQPP
FTQPGPAPFYNPANPAIGLQQPVNLLGNMNQPFLPQNSVPYRPQTPQVVPPENHFGQVDV
NELLTKLLSTGIIKPSQPDAAPAASTESSTVVAPAAPPAEEEEEEEQEVEEEEDIPDLTS
FTVDDMKPRYECVVMKLYSGNQCCLCSMRFTTIQTDLYADHLDWHFRQNHAGKVASKKIT
HRRWYYNLKDWIEFEEIADLEERAKSHFFEKENEEEVQKSQAAAKEREVQIVRATKDQVG
ESCEICQEPFETYWVEEEEDWFLKDAVRVDDKNFHPACFEDYKNTSSYLDVTPSPSKLLT
EHPLSTFLEPKEEEEEEEEETSCSNAAASVKQEVEPEAVELLNVKQEEAELLIDQVQSEE
NV
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagcgcggccagagaagacgcctgccgggagtaccagtcctccctggaggac
ctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggccgaggagaacctg
accttcgccaaggatatcgtcgcaataattgaagctcaaatcagcaaggcccccgctgcg
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttggaggagagtac
cttgctgtgtttgctaaaaacctaatcacttcatttatatgtgtctttgaaaaggtggag
gaaaacaccagaaagagtctgtttaagctgcgctctacatgggacgaggtcttccccctg
aagaagctgtacgcggtggacgtgcgtgtcaactcggtggacccggcgtggcctatcaag
cctttgccgcccaccgttaacgccagcattcatgtcaaccccaagtttttaaagcagtct
gaggaggcctcttctccgcagccagctccctcccagcccccggcgccgctgtcagccgcg
gtggtggcgcctgctccccagccggtcccagcggtcagccagtccagcgtgacccaggag
cagctcatccgacagcagctgctggccaaacagaaacagcttcttgagcttcagcagaag
aagatcgagctggagctggaacagacgaaagctcagctggccggaggattcacattaccc
acagcgcctccagcctcctctccagctgcccccaccatgacgccaaaggccctcagccag
aatgcccctgtggtccgaccctggatccctccccagactcagtctgacaccaagacgacc
accagggaccctcgtctgaaccgcatcggccccccagctgcgtcccagaccaaagaacag
cctgctgggaaaaaagacagtctccaaaaaggaagtcctgccctgacgcctgagaaacgg
cagccggagaaatccttcagaccggaaaagaccagaaccccaaggaaagagacgtcagaa
gagaagatcaagtccaagtctctgtctccgatgaccaaaagcatccaaagcaaaaacaaa
caggctgaggctgaaggtcagaaatcatccgacggctccaaaaaagatccacggctgagg
aaacgcacacaggtcaagagcggagagagcaaagacgaagagctgaaggagaagaagaga
tgcaacgacaagaaggagagagaggaggcggtactgggggcggagctgcagaggttcagc
aaagggaagctggcgaatgggttcgtcatcaaacacgagcgcgaggaggcggagaaggtc
gagttcaaaagtggaggcaacgccagaacacatgccaggaagcggacacgctccaggtct
cgctcgcccacctcctctccgaagaggaaggataggcgctcgcccaaaggcagagccagg
agcagctcgctgtccccgtcaccctctcacaaaccggtgaaaccccggagggtccgtgta
gatgaaccgctgcatggcaagcccggccgagatgaccgggtcacactcaagaagagccaa
tcagagagcaggaggtcgaagagaccacaggacgatcgacactccgagtccagagactct
cactcgccccgaagtcatgatggaagtgggaaggagacgaaggaggctcctcatcgctgg
aggagcggctggcaggagaacaaacatttgaagttgccagacgacgcctccatgaagcct
ggaccccagagacacaaaccgtacaaccccccgacccgcccccccaccccccgaaccctg
aagcaccgcctcagcgtggacgccaacctgcagatacctgaagccctcaacgccgcctcc
aagaaggacctgctgaggagggccagtaaacgtctggagagcggggagatttctcaagag
gaattcctcaatgtggcgcaccagctcaaacatttcttccagtaccaggaggagaagctg
cagcgctcagagagctgggacggctctggtaactttgccaagaaacagccgctgctggcc
ccccccgcctccgggccccgccccgatgccatggacgccgcagagctgtcgtactacgag
cacaagtccaagctcaggaagacgcaggtcacccaccgagtggccggagaggagtgggag
ggcgaggagaatgtggaggatgtcgatgtaacagacgtaggcgagaagacaggtgggggc
cggagcattggaggacacccaccgccacataaatacagccgagcgccacgagacagacaa
ggtgaaagacggagtaaagaacgagaagagtcgcggcctccgctcggccccatgatcgaa
gagtacaaccacggcaaagagttccccaccctcaagtctctgccgggccttcgcttccgg
agacgagccgacccccgagactccagtgagagagagtggaactcgccgctgaccgagcgc
cagcgcgaggagcagaagagcggatacgacgctccacggaggtacacgccctctgttgac
cccagacatcctgacccccggaggccggaggggccccttccctccggcacagtggttcac
aggaactgtcccagtccgaccggtccggacgcccccatcccgaggttcgagcgtgagcgc
ctgtcacctctacaccagaaggactcggctgagatgagcccggtcccgcgctttgagagc
cccaacagtgaacattctgatgaagggcccctcaaaccggatgtcccccctccacaacct
ccccttccccccatcctcaaggccccagcgcgtgttggacccctgtcgtctgtccgacag
cagagcagctcgccgggacacacccctcctcacgaagcagggcatccgcagtccaggtat
gatggcccagaacacatagccccccccagaccccaccctctcggctggtacgatgactcc
tcacagttcgaagggcctcaaccccaggggccagtcaggttcgatggcggcagaccacat
cacaacataccagagaggtttgatggcccagacggaacccacctgccccacggtccaatg
agaggcggagacgggatggggaggtttgatgttcacccccaccctcaaggccccgggagg
tttgatggtgccatgggccaacagcccccagtgcgatttgtgggtcaggggccgggacat
tttgaggggccaatgcagcactttgaaccaccaagacgctttgacaacaacatggcccct
ggaccaatgggcttccagcagcagcaggctttgcgttttgaaggccctccaaaccaaatg
ggccccatgaggtttgacggccccaatcacgggtatgacatgcccaacgtaccccatcag
ggtggacacacacactttgagggcccccctgggcatcaggggccccccaggttccctccc
caacacaacatgcaaccacccatgaggccgatagccccgcccatttacgacaacccaatg
aacccccagcagaacttcaacatgggccctcagtgtttcccagagcccatgaaccctcag
ttccctgcggggccaatggcgttcccggcgcagacggtgaactttaacctgcagccgcca
ttcacccagccgggccccgcccccttctacaaccctgccaaccccgcgattggccttcag
cagccggtgaacttgttggggaacatgaatcaaccgttcctgcctcagaactcggttcca
tacagacctcagacgccgcaggtcgtccctccagagaaccacttcggtcaggtggacgtc
aacgagctgctgaccaagctcctctccaccggcatcatcaaaccttcacagcccgatgct
gcgccggccgccagcaccgaatcttcgaccgttgtggcgccggcggctccgccagcggag
gaggaggaagaggaggagcaggaggtggaggaggaggaggacatcccggacctgaccagc
ttcaccgtggatgacatgaaaccgcgttatgagtgcgtggtgatgaagctgtactcgggg
aaccagtgttgtctctgcagcatgaggttcaccaccatccagacggacctgtacgccgac
catctcgactggcacttcagacagaaccacgccgggaaggtcgccagcaagaagatcaca
caccgccgctggtactacaacctcaaggactggatcgagttcgaggaaatcgccgacctg
gaggagcgagcgaagagtcacttctttgagaaagagaacgaggaggaagttcagaagagt
caggcagcggcaaaagagagagaggtccaaatcgtcagggcgaccaaggaccaagtggga
gagtcatgtgaaatctgtcaggagccgtttgagacgtactgggtggaggaggaggaggac
tggttcctgaaggacgctgtcagagtcgatgacaagaattttcatccagcatgttttgaa
gattataaaaatacgtcttcgtatctggacgtcacgccgtcgcccagcaagctgctcacc
gagcacccgctcagcaccttcctcgagcccaaggaggaggaggaggaggaggaggaggag
acttcctgctccaacgctgccgcctcggtcaaacaggaagtggaacccgaggccgtggag
ctactcaacgtgaaacaagaggaggcggagcttttaattgaccaagtgcaatcagaagag
aatgtgtga
DBGET
integrated database retrieval system
