Pleuronectes platessa (European plaice): 128457011
Help
Entry
128457011 CDS
T09923
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128457011 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128457011 (lig3)
Enzymes [BR:
pplt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128457011 (lig3)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128457011 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
PhiKZ_gp35
Motif
Other DBs
NCBI-GeneID:
128457011
NCBI-ProteinID:
XP_053297461
LinkDB
All DBs
Position
15:complement(2898648..2915316)
Genome browser
AA seq
1011 aa
AA seq
DB search
MQRRLISFAPKPFCAGLPSLHSLVRRQTLFKVCRSSPGSSRFTHHPPPVYVFHLSKGICS
FSSASHKNNLLHNNFPRLSQRRCCSNEPDMAEQRFIVEYAKRGTAGCKKCKDKIPKEVVR
IGKVVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLDGWEELQDEDKEIIN
KHVSDLMAKVNSTPKKKTPVKQNAAAKLMAPPADPSLNAPRKFSGFTATKAGPSGSPGPS
SSSPPAASQGSALSTQLCDPQHKDCLFREFRKLCATVAENNSYNVKTQIIEKYLKKGSCG
DKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFARIFRSNQEDMVRDLEQGDVSETVRM
FFDESKSFPPSTKSLLTLQEVDASLTRLAQLTKEDEQQTELEEIAKKCTSNDLKCIIRLI
KHDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNTQDATNSSGPRKLLTVEAS
LMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDVFSYFSRSLKPVLPH
KVAHFKEYIPLAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVFD
CIYFNGVSLMERPLRERRKFLVDNMEEVPNRILFSEMKHVTRAGDLADMITRVIREGLEG
LVLKDVKGSYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCY
DPDSKKWCTVTKCSGGYDDAMLARLQKELDMIKISKEPSKIPGWIKVIKNYYPDFIIRDP
QRAPVWEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKTATNLHQLKELFRISKENC
DFKVTAGPSSEDKGSSGGDSGGSSPSPSSRGGKAPPPAPRTSTTPKLKAVKSEPRSPPPE
APAAKKVKKTEDVHSNGQSKTKSTSQLLQPRNDKTLLDIFSGVKLFLPVSVQDFHKLRRY
FVAYDGDVVEDFDSGSATHTMAEPEEDSPAQRVTPSWIWDCIRKRRVLPPC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgacgtctcatctcattcgctcccaagcctttctgtgccggtctaccaagtctt
cactcactcgtcagacgtcagacactcttcaaagtgtgcagatcctctcccggctcttca
cgcttcacacatcaccccccacctgtatatgtgtttcatttgtccaagggaatctgtagt
ttttcatcggcgtctcataaaaacaacctcctccacaacaacttcccgcggctttcccag
cgtcggtgttgctccaacgagccggacatggcggaacagaggttcatcgtggaatacgcc
aaacgtggcacagcgggttgtaagaaatgcaaggacaaaatcccgaaggaggtggtgcgc
atagggaaggtggtgcccaacccgttcagcgagtcggcgggggagatgaaggagtggtat
cacgtcaagtgcatatttgagaagctggaaagggcgagagccaccacgaagaagatcgag
gacatcacggatctggacggctgggaggagctgcaggacgaggacaaggagatcatcaat
aaacacgtttcagacctgatggccaaagtcaattcaaccccaaagaagaagacaccagtc
aaacagaatgccgctgccaagctgatggctcctcctgccgacccgtctctcaacgctcca
cgcaagttctcaggcttcacggccactaaggccggcccctccggcagcccgggcccatcg
tcctcctccccccccgcagccagccaaggcagcgccctgtccacgcagctctgtgacccc
cagcacaaggactgcctcttcagggagttccgtaagctttgtgcaacggtggcagaaaac
aacagctacaacgtgaagacccagatcatcgagaagtatctcaagaagggctcatgtgga
gacaagttccatggagacctttacctcacggtgaagctgctcctgcctggcgtcgtaaag
agtgtctacaacctgaatgacaagcagatagtaaagctctttgcccgcatattcaggagc
aaccaggaggacatggtgcgcgacctcgagcagggcgacgtctccgagacggtgaggatg
ttcttcgacgagagtaaatcatttcccccgtccaccaagagcctgctgaccctccaggag
gtggacgcgtctctgacccgcctcgcccagctgaccaaggaggacgagcagcagaccgag
ctggaggagattgccaaaaaatgcaccagcaacgacctgaaatgcatcattcgacttatc
aagcacgacttgaagatgaactccggagctaaacacgtcttggacgccgtggatccaaac
gcttacgatgccttcaaggcctcacgcaacctgggcgatgtgatagagcgggtgttgagg
aacacgcaggacgccaccaacagctcgggccccaggaagctgctcacggtggaggcctct
ctcatgacccccgtccagcccatgctggccgaggcgtgtaagtccgtggagtacgccatg
aagaagtgtcccaacgggatgttctccgagatcaagtacgatggagaacgtgtgcaggtc
cataagaacggagacgtcttcagctacttcagccgcagcctcaaaccagtgctgccacac
aaagtggcccacttcaaagagtacatccctctggcgttccccggtggccacagtatgata
ctggacgctgaggttctcctaattgacaccaacaccagtaaacctctgccctttgggacc
ctgggtgttcacaagaaagctgcgtttcaagatgccaaagtttgcctctttgttttcgac
tgcatctacttcaacggtgtgagtctcatggagaggcctctgcgtgaacgcaggaagttc
ctcgtcgacaacatggaggaagttcccaacaggatcctgttctcagagatgaagcacgtc
accagagcaggagatctggccgacatgatcacccgtgtgatcagagagggactggaaggc
ctcgtgctcaaagacgtaaagggctcctatgaaccggggaagcgtcactggctgaaggtg
aagaaggactatctgaacgaaggggcgatggcggacacggccgacctggtggtgctcggg
gctttctacggaaaaggctccaatgggggcatcatgtccagtttcctgatgggctgttac
gaccccgactccaagaaatggtgcacagtcaccaagtgctccggaggctacgatgacgcc
atgctggcccggctccagaaggagctggacatgatcaaaatcagcaaggagccgagcaaa
atcccaggctggataaaagtcatcaagaactattatcccgatttcattatccgcgatcct
cagcgagcgcccgtctgggagatcacaggcgccgagttctccaaatctgaaatgcacacg
gctgacggcatctccatccgcttcccccgcatgacgcgcgtccgcgatgacaaggactgg
aagaccgccaccaacctgcaccagctcaaagagctgttccgcatctcgaaggagaactgt
gacttcaaggtgacggccgggccgtccagcgaggacaagggctcgtcaggaggagacagt
ggggggagctccccgtcgccctcgtcccgcggaggcaaagctcctccgcctgctcctcgc
accagcacgacccccaaactgaaggcagtgaaatctgagccccgcagcccccccccagag
gcccctgctgccaagaaggtgaagaagacggaggacgtccacagcaacggacaaagcaaa
accaagagcacgtctcagctgctgcagccgaggaacgacaagacgctgctggacatcttc
agcggcgtgaagctcttcctgcccgtctccgtgcaggacttccacaagctgcggcggtac
ttcgtggcgtacgacggggacgtggtggaggacttcgactccggctccgccacacacacc
atggccgagcccgaggaggacagcccggcccagagagtcacacccagctggatctgggac
tgtatccgcaagaggcgcgtccttcctccctgctaa
DBGET
integrated database retrieval system
