Pleuronectes platessa (European plaice): 128457197
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Entry
128457197 CDS
T09923
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03440
Homologous recombination
pplt03450
Non-homologous end-joining
pplt04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128457197 (rad50)
03450 Non-homologous end-joining
128457197 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
128457197 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pplt03032
]
128457197 (rad50)
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128457197 (rad50)
DNA replication proteins [BR:
pplt03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
128457197 (rad50)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
128457197 (rad50)
BRCA1-C complex
128457197 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
128457197 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
SbcC_Walker_B
ABC_tran
AAA_15
AAA_29
zf-met
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
128457197
NCBI-ProteinID:
XP_053297749
LinkDB
All DBs
Position
15:complement(8356888..8373396)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQLISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIQRAMSCTQKAKNYSFKSLEQVITR
TKDGEKQSMSSKCADVDREMISALGVSKSVLNNVIFCHQEESNWPLCEGKALKEKFDSIF
AATKYIKALETMRQQRLAQNHTVKECEVELHYLKQNKEKAQQLRETMDTKEAHLMASKDS
VEKIEGQIDPLENRLIDIDTKFGKVMKLDNDIKALESRKTQMEEDNKELKDTMEQVFQGP
DEQLQETYQNHQRTVKEKERRLTDCQKELERAGRECQRLNQLKGALLVEQGRLQLEADRH
TQNIRNRDTQVRSLASFLEMEGYDRPPFTTLQLESFHRHVTQRLEQEKETASQVLADLQE
KEQQKQQSIDEIRDKKTGLERTVELKRDLQGKKQQELRNIRAELQRLEGSSTRLQVLENE
LAKAERELQSSMQSSNVEELKVEVVELQREKAELDRTQRRLDQEMETLNIHTSTRTQMDM
LKKEKTEKEDQVRKIKSRHSEDLVSLLGHFPNKKELEDWIYTKSKEINSTRDRLAKMNKD
LASSEQNKSHIASELRKKEQQLSSDEEKFFNVCGSQDLEQDLGKLQDDLEKISKQRAMLA
GATAVYTQFISQLTEEKEPCCPVCQRTFPSEPDLEEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKDEMMSLRPVRQSIVQFQEKELPELRNRLQTVNREIERLKGEVDEQETLLGTLMS
EEETAKACLQDISLMDRYQIDLKGVERQITQHGTKLQGVDLTRTTQQVSQEKQETQHRLD
TTSSKMELKRKLIQDQQDQIQMQKSAVNETKAEKLQLSSDMQKQQQLEEQCVEFTTDIKD
LTRDIREAKEQLSPLSAALEKLQQEKQELVERKRQKQEEGQEKINAIKEKVKVITTLERD
ITKYVDESKNEYKEQKESELQETNTQLHDAEKQKEKISKEIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKDVVAKREALMKDMGSMQVQQLRQERRDAERKLEDLKKTRSIALGRQKG
FEEEILHYKKELREDQYDKADERYKIKMIIMRTTELVIKDLDIYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDEHSSASAKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSTYLN
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctgggggtgaggagctttgggatcgaggacaaa
gacaaacaattaatatcgttcttcactcctctgactgtgctggtcggacccaacggagcg
gggaaaacgactatcatcgagtgccttaagtatgcaacatctggtgaacttccccctgga
tctaaaggaggggctttcgttcatgatccaaaggatgcccatgagacagatgtgcgagcg
cagattcgcctcttattctcggatgtcaatggagagaaagtgaccatccagcgcgccatg
tcctgcactcagaaggcaaagaactactccttcaaaagcttagagcaagtcatcacgaga
acgaaagacggtgagaagcagagcatgtcgtctaagtgcgctgacgtggaccgggagatg
atttccgcgctgggtgtgtcaaagtctgtgctgaataatgtcatcttctgtcaccaagaa
gagtcgaactggccgctctgcgagggaaaggcactcaaagagaagtttgactctatcttc
gctgcgacaaagtatatcaaagctctggagaccatgcgtcagcagcgccttgcacagaac
cacacggtcaaggagtgtgaggtggagctgcactacctgaagcagaacaaggagaaggcc
cagcagctgagagagactatggacaccaaggaggctcacctgatggcctctaaagacagc
gtagagaagatagagggccagatagatccacttgagaatcgactgatcgacattgacacg
aaatttgggaaagtgatgaagctggacaacgacatcaaggctttagagagcaggaagaca
caaatggaggaggacaacaaggagctgaaggatacaatggaacaggtgtttcagggccca
gacgagcagctgcaggaaacctaccagaaccaccagaggacggtgaaggagaaggagcgg
cggctgacagactgtcagaaggagctggagagagcgggccgagagtgccagcggctaaac
caactcaagggcgctctcctggtagaacaaggtcgtcttcagctggaggctgaccggcac
actcagaacatcaggaaccgtgacactcaggttcgctctttggcatcctttctggaaatg
gagggatacgaccggccgcccttcaccactctgcagcttgagagttttcaccgtcacgtc
actcagagattggagcaggaaaaagagacagccagtcaggttttggcggacctgcaagaa
aaagagcagcagaagcaacagtccattgatgaaataagggacaagaagactggcctggag
agaacagtggagctgaagagggacctgcaggggaagaagcagcaggaactgaggaacatc
cgagcagagctgcagaggctggagggttcgtccactcggctgcaagtactggagaatgaa
ttggccaaagcagagcgcgagctgcagagctccatgcagagctccaacgtcgaggagctc
aaggtcgaggttgtggagctccagagagaaaaggccgagcttgatcgcacacaaagacgg
ctcgaccaagaaatggagacgctcaacatacacacctcaacacgcacacaaatggatatg
ctgaaaaaagaaaagacagaaaaggaggaccaggtacgtaagatcaagtctcgtcacagc
gaggacctggtgtcgttgctgggtcactttcccaacaagaaggagctggaagactggatc
tataccaagtcgaaagaaatcaacagcactagggacagactcgccaaaatgaataaggac
ctggcatcaagtgagcagaataaaagtcacattgcttccgagctgcgtaagaaggagcag
cagttatccagcgatgaagagaagttcttcaacgtgtgtggcagtcaggatctggagcag
gacctgggcaaactgcaggatgatctggagaagatatccaaacaaagagccatgcttgct
ggggccacagcggtttacacccagttcatcagccagctgacagaggagaaggagccctgc
tgtcctgtgtgccagcggacgttcccatcagagcccgatctggaggaggttatcagtgac
atgcagtccaaattacgcctggtgccagacaagctgaaaaacacagagcaggacctgaag
aggaaggagaggaagaaggatgagatgatgtctctcaggcctgtcaggcagtccatcgta
cagtttcaggagaaggagttgcctgagttgagaaaccgtctgcagactgtgaacagagaa
atcgagaggctgaagggagaagtggatgagcaggagacgctgcttggtaccttgatgtcg
gaggaggaaaccgccaaggcctgcctgcaggacatatcgctcatggacagataccagatt
gaccttaaaggggtcgagaggcaaataactcaacatgggaccaaactccagggagtcgac
ctgaccaggaccacccagcaagttagtcaggagaaacaagaaactcagcacaggctagac
accacctccagcaagatggagctgaaacgtaaactgatccaggaccagcaggatcagatt
cagatgcagaaaagtgctgtgaatgaaacgaaagcagagaagctccagctgagcagcgat
atgcagaaacagcagcagctggaggagcagtgtgtcgagttcactaccgatatcaaagac
ttaaccagggacatcagggaagcaaaggagcagctctcccctctgtctgctgctctagag
aagctgcagcaggagaagcaggagctggtggagcgcaagaggcagaagcaggaagaaggg
caggagaagatcaatgccattaaagagaaagtgaaggtgatcaccaccttggaaagagac
atcaccaaatacgttgatgaaagcaaaaatgaatacaaagagcaaaaagagtctgagctt
caagaaaccaacactcagctgcatgatgctgagaagcaaaaggagaagatcagtaaggag
attggaaacatccgtcaggacatagacactcaaaaggtccaggagcgctggctgcaggac
aacctcactttgaggaagcgtgtggaggagttgaaggatgttgtggccaaacgtgaggct
cttatgaaagacatgggaagcatgcaggtccagcagctccgccaagaaagacgtgacgca
gaacgcaaactggaagacttgaagaagacccgcagtattgcactgggtcgacagaaaggc
tttgaggaggagatactgcattacaaaaaagagctgcgggaggaccagtacgacaaagct
gatgagcgctacaaaatcaagatgatcataatgaggaccacagagctggtcattaaagac
ctggatatctactacaaggccctcgatcaaacaatcatgaaattccacagtatgaagatg
gatgagatcaacaagattatcagagacctgtggcgcagcacctacaggggtcaagatatc
gaatacgtggagatccggtctgatgtggatgagcactcatctgcttcagcgaagcggagg
gtttacaactacagagtagtgatggtgaaaggagacacagctttggatatgagaggacgc
tgcagcgctggtcaaaaggtgttggcgtccttgatcatccgtttagctctagcagagacc
ttttgtctaaactgtgggatcctggctctggatgagcccaccaccaacctggaccgggag
aacatcgagtcactggcacacgccctcgtagaaatcatcaagagtcgctctcgccagcgc
aacttccagctgctgatcatcacccacgacgaggactttgtggagctgctggggcgatcc
agctacatcgaacacttctaccgcatccgcaagaaccaggaccagaactctgaaatcaca
aagtgcagcatcacctccctctcaacgtatctcaactga
DBGET
integrated database retrieval system
