KEGG   Pleuronectes platessa (European plaice): 128458174
Entry
128458174         CDS       T09923                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4 isoform X1
  KO
K12881  THO complex subunit 4
Organism
pplt  Pleuronectes platessa (European plaice)
Pathway
pplt03013  Nucleocytoplasmic transport
pplt03015  mRNA surveillance pathway
pplt03040  Spliceosome
pplt05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pplt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128458174 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    128458174 (alyref)
   03015 mRNA surveillance pathway
    128458174 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    128458174 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pplt03019]
    128458174 (alyref)
   03041 Spliceosome [BR:pplt03041]
    128458174 (alyref)
Messenger RNA biogenesis [BR:pplt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     128458174 (alyref)
    TREX complex
     128458174 (alyref)
Spliceosome [BR:pplt03041]
 Complex C
  Other components
   EJC/TREX
    128458174 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    128458174 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 128458174
NCBI-ProteinID: XP_053298852
LinkDB
Position
16:complement(19657099..19660141)
AA seq 284 aa
MADKMDMSLDDIIKQNRQQRGGGRGGGGRGRGRGGSGGGRGAGGAGRVGMRGGGGGGDGG
FGGRGGGSGPMRNRQNPSRARGRTTPYNRLKSLPDKWQHDMFDNGFSGFNGAAGGGGGGG
VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALK
AMKQYNGIPLDGRPMNIQLVTSQIDTQRRPVQGLNRGGGGGMNRNRGGSFGGMQRGRGGR
GAGGPGGPRGRGRGGRGGNPKAAAMSAEELDAQLDAYNARMDTT
NT seq 855 nt   +upstreamnt  +downstreamnt
atggccgataagatggatatgtctctagacgacattatcaagcagaacaggcagcaaaga
ggcggaggccgcggcggcggcggaagaggccgaggccgcggaggctccggcggcggccga
ggagcaggcggcgccgggcgcgttggaatgagaggaggcggcggtggcggcgacggagga
tttggaggccgaggcggtggatccggccccatgaggaaccgacagaacccgagccgtgct
agaggcagaacaacgccttacaacaggctaaaatcgcttccagataagtggcagcacgac
atgttcgacaacggcttcagtggcttcaatggtgctgctggaggtggcggaggaggaggc
gtggaaactggagggaagctcctcgtctccaatctcgactttggcgtctcagatgcagac
attcaggaactctttgctgaatttggaactctaaagaaggcggcggttcattatgaccga
tcagggagaagtctgggaactgcagatgtccactttgaaagaagagcagacgcactcaag
gccatgaagcagtacaacggcatcccactcgatgggcggcccatgaacatccaactcgtc
acatcacagatcgacacacagagacgacctgtacagggtctgaacagaggtggcggcgga
ggcatgaacagaaatcgagggggcagcttcggcggcatgcagagaggtcgaggaggccgt
ggtgccggtggtccagggggtcccagaggacggggtcgaggaggacgtggcggaaaccct
aaggcggcggcgatgtcggcagaggaactcgacgcccaattagacgcctacaatgccagg
atggacacgacataa

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