Pleuronectes platessa (European plaice): 128458175
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Entry
128458175 CDS
T09923
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128458175 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128458175 (xab2)
03041 Spliceosome [BR:
pplt03041
]
128458175 (xab2)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128458175 (xab2)
Spliceosome [BR:
pplt03041
]
Complex B
Other components
Prp19-related factors
128458175 (xab2)
Complex C
128458175 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
TPR_MalT
NRDE-2
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
128458175
NCBI-ProteinID:
XP_053298854
LinkDB
All DBs
Position
16:complement(13500441..13507096)
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNEKTDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTKSTLNMIYERALKELP
GSYKLWYSYLRERRKQVKGKCILESSYEEINNCHERALVFMHKMPRIWLDYCQFLVAQSK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNVSLPETAIRVYRRYLKLSPQNAEDYID
YLRSVGRLDEAAVRLAAVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAENGQDEEDDIDLELRLARFEELIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPIKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVT
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGSFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVDNDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDIHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTATFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTSTTGTVSDLAPGQMGLDDMKMLEQKAQLLAAEAEQ
DKPKLKEKILFVRSDTSRTELAELAKQANPDEIDIDDDEDDDEGQGPEEVQLEQKSVPTA
VFGGLKDE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgctgaacgaaaaaaccgatgttatttttgaggacgatgatctgccctatgaa
gaggagatcatccggaacccgtactccgtcaagtgctggatgcgttacatcgaattcaaa
cagaacggaaccaaatccaccctgaacatgatctacgagcgggctctgaaggagctgcct
ggcagttataagctgtggtacagttacctgagagagagacggaaacaagtcaaagggaaa
tgcatcttggaatcgtcttatgaagagatcaacaattgccatgaaagggctctggtgttc
atgcacaagatgcccagaatatggctcgattactgccagttccttgtggctcagagcaag
atcacaagaagtcggcgaacatttgaccgggcactccgagcacttcccgtcactcagcac
ccgcgcatctggcctctgtatctccgcttcgcccgcaacgtgtccctgcctgagactgcc
atccgtgtgtatcgtaggtatcttaagctttctccacaaaatgcagaggactacatcgac
tacttacgatctgttggccgcttggatgaagctgctgtgcgactggcagctgttgtgaat
gacgaaagatttgtgtcaaaagaggggaaatctaactatcaactgtggcatgagctgtgc
gacctaatctcccagaaccccgataaggtgacttccctgaatgtaggagccatcatccga
ggaggcctcacccgcttcactgaccaacttggaaaactttggtgctccttagctgactat
tacatcaggagcggccactttgagaaggcccgcgatgtatacgaggaagccatccttaca
gtggtgacagtgagggatttcacacaagtgtttgacagctatgcccagtttgaggagagc
atgattgctgccaagatggagaccactgctgagaatggacaggatgaagaagatgacatc
gacctggagcttagacttgcccgctttgaggagctcatagctcggcggcccctccttttg
aacagtgttctgctgaggcaaaacccacataatgtgcacgagtggcacaagcgggtaaag
ttgtatgatggcaatccaagacagattatcaacacatacactgaggcggtacagacagtg
gatccgataaaggccacagggaagcctcattctctctgggtctccttcgctaaattctat
gaggagaatgagcagctggatgatgccaggacgatctttgagaaggctaccaaggtgacc
tataagcaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagcttcgc
catgagaactatgaacaggcactgcgcatactgaggaaagccacagccatcccatctaag
aaagcagagtactttgatgtatccgagccagtccaaaacagggtgtacaagtccttgaag
gtctggtctatgctggcagacttggaggagagtcttggctcgttccagtctacaaaggca
gtgtatgaccgtattattgacctccgcatcgcaacgccacagatcatcatcaactatgcc
atgttccttgaagagcacaactactttgaggagagcttcaaagcctatgagcgcggcatc
gctctcttcaggtggcccaacgtttacgacatctggaacacttacctcaccaagttcatt
gatcgatacggcggcaagaagctggagagagcaagagacttatttgaacaagcccttgat
ggctgcccccccaagtttgccaagaccatatacctgttgtatgccaaattggaggaagag
tatggattggcgcggcatgccatggctgtatatgaaagagcgacacaggcagtggacaat
gatgagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggtgtc
acttataccagagcaatttatcagaaagccattgaggtccttcccgatatacatgcaagg
gacatgtgtctgcggttttctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctactttctggcag
gcctggaaagaatttgagatccgccatggaaacgaggacaccattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaacttcatgtcctcgcagatg
atgaaggccacaacaagcaccacaggcactgtgtcagaccttgctccaggccagatggga
cttgatgacatgaagatgttggagcagaaagcacaactgcttgctgcagaagccgagcag
gacaaacctaagctcaaagagaagattctcttcgtcagaagtgacacttctcgcactgag
ttggctgagcttgccaaacaggctaatcctgatgagatcgacattgatgatgatgaggat
gacgacgaaggccaaggaccagaagaggtgcagcttgaacagaagagcgtccccacagcc
gtctttggaggacttaaagacgagtga
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