Pleuronectes platessa (European plaice): 128458588
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Entry
128458588 CDS
T09923
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pplt01001
]
128458588 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pplt04054
]
128458588 (ciita)
Enzymes [BR:
pplt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128458588 (ciita)
Protein kinases [BR:
pplt01001
]
Serine/threonine kinases: Other
TAF1 family
128458588 (ciita)
Pattern recognition receptors [BR:
pplt04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128458588 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_NLRC3
LRR_6
LRR_TMOD-LMOD
LRR_4
LRR_14
AAA_16
LRR_CARMIL
LRR_NLRC4
nSTAND_NTPase5
nSTAND3
AAA_22
NB-ARC
PRAME_C
AAA
VapE-like_dom
TsaE
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
128458588
NCBI-ProteinID:
XP_053299451
LinkDB
All DBs
Position
16:20453579..20466162
Genome browser
AA seq
1389 aa
AA seq
DB search
MKTQARCLDVKLEVKMELGVACRTLDLHNLENTDSSLTLDTRGAADSMKGLCHSASDSIT
TTGVNMEPVSVSGAAGNASPVEACADNISSTCLEDHLCVRCVADGATHTTDDLMCVSGDA
QWGMDAGFADMDHFFLACSAMDSPAKAQDYSSYSEMDQSTTLDNLEQILRTDFHEEDEDK
GRVGSHWGAKMHEVDQDPLDLGDLPEDLSEFLNDDYLLGTDVFFGDPWFNPEELTNFNEV
AVPAEQPRTGGHQQGQTDQFTGIQNKRRKRQRVPRSQRCTDEKKPPSTPKRHRAAGANVE
AELITAEAADPTTTPTRILHLQPRIHFITIPDSKGYQLIPNVGLSPPVIRLRLPGAAATP
TYILVPSASTPCKPQLQPLSPVDAAVVPVQMSSSPPGSLSDTASRAMSPAHTSISSTKTS
PSNESPPPQSPTVHDIPESVRDYIQKVKAHMSLTCPAIEEGVSLTSHYVDVKVSQRETFR
LGKNANRVLDQELIITGDTDRQNSLLGLSQIFGDSNGHSPKRYIVLLGNAGMGKTTLIRK
LCLDWSRDSIPQFDFVFLLDGKTLALKNPIYSLQTLLLNLSSFASSCTNPEEVYAQILAA
SKRVLIVFDNFDELREYEVLLQTQEKDVITSLQKDSKAETYTVKQLFSAILQRVLLPGCT
LLLSTRPRGSANQLLRRADSFLEVCGFTPTDVEAYLSQYFTEPALRATALDYLKNCSYLH
LLCWNPGLCRLVCLVLEQSKTLDVLPRTLTGLCHQVLRLKMEKHGKATDSQPDVKTQTPL
QSEEEKQTQIPDNNQLNVSHKNIPVRKSRPRVHTGTRSSNRRARGAEKQVTEGSEVDGEE
MDSVGREVDRTEERELLSQLSSLAWEGVKANSSILPTRRTLAAKHKAFGLRTGLLLCHPL
RKRLGVSTEEGGGGEDRKEMGGGEEQDVKRDRGTTEIINSDESDGHILLWASPFLQSYLA
GVHLSFSKTVSERTFLQNLPFHSGLKGRRRPQREEFQLTQQFAVGLLFHNRAELQSLHSH
REAAFRDMVVNRQALVTKHLKGLSHGDLSPAQVLEACHYVYEASFTSSGDGSRGSARLVA
HLAANLPDVLSFHGVRLNPPDVFTVQNMLERGGGFCLDLGDSGIGVSGLRALVGLDNVNS
YRACIADVIALWEQLEQSGEEGLLRGAVSKFKVHPLKVTQLCHVEHLAQLVNIHVHRRLS
SSCTDSESILADGVPAVKELHKLEFELGPDKGPLGISKLWELLPALRNLQHLDLENSKIG
DEGSEKLADALASLCSLEILNVSQNCIGDHGLKKLATTLGYLPNLHCLSLYSNVISDEGA
ESLAALLPHMASLTDLDVKYNKLTDVGAQSLGASLRNCKKIRTLRMWNQCIPYGVFERLQ
QQDGRILWH
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaagcacgatgccttgatgtgaagttggaagtgaaaatggagcttggagtt
gcttgcaggacgctggatttgcacaacttggagaacacggactcgagcttgacactggat
acacggggagccgctgactcaatgaaaggcctctgtcattctgcatccgacagcataacg
accactggagtgaacatggagcctgtcagtgtctctggagcggcaggaaacgcttcacct
gttgaggcctgtgcagacaacatctcctccacctgtctggaggaccacctctgtgtccgg
tgtgtcgctgacggggcgacacacacaacagacgacctgatgtgtgtgagtggagacgca
caatggggcatggatgctggttttgcagatatggaccatttctttttagcctgttctgca
atggactctcctgctaaagcacaggattactcctcttactcagaaatggatcagagcacg
acgttagacaacttagaacaaatcttaaggacagatttccacgaggaggatgaggataag
gggagagtgggttcacactggggtgccaagatgcatgaagtagaccaggacccactcgac
ctcggagatctaccagaggatttatctgaattcctgaacgatgattacctgttgggcacg
gacgttttctttggtgatccgtggtttaatcctgaggaactcaccaacttcaatgaagtc
gctgttccggcagagcagccgcgcaccggcggtcaccagcaggggcagacggaccaattc
accggcattcaaaacaaaaggagaaaaagacagagagttcctcggtcacagcggtgcact
gatgagaagaaaccaccatccacaccaaaaagacacagagcagcaggcgccaacgtggag
gcagagctcatcactgcagaggcagcggacccaaccaccactcccacaagaatccttcac
ctccagccccgtattcatttcatcaccatcccagactctaaaggatatcagctcatcccg
aacgtggggctctcccctccggttattagacttcgactccccggtgcagccgctacaccc
acatacatattagttccttctgcctcaacaccgtgcaaaccccaactgcagccgctctcc
ccggtggatgctgcagtagttcccgtccaaatgagctcgtcgccaccaggttcgctgtcg
gacaccgctagcagagcaatgtctcccgctcatacctcgatctcctccacaaagacttcc
ccatctaacgaatcacctcctcctcagtctcccactgtccacgatattccagagagtgta
agagactacattcagaaagtcaaagcccacatgagtctaacatgcccggctatagaggag
ggtgttagtctgacctctcattacgtggatgtgaaagtgagccagagagaaaccttccgc
ttgggaaagaacgcgaacagagtcctggaccaggagctcatcatcacgggagatacggat
cgacaaaacagcttgttggggctcagtcagatcttcggagactcaaatggacatagcccc
aaacgatacatagtgctgcttggcaatgcgggaatgggaaaaaccaccctgatcaggaag
ctgtgccttgactggtccagagacagcatcccacagtttgactttgtcttcctattagat
ggcaaaacactcgctttgaaaaaccccatctacagccttcagacccttttattaaacctc
tcctcctttgcctcttcttgcacgaaccccgaggaggtgtacgctcagatccttgcggcc
tccaagcgcgtgctcatcgttttcgacaattttgacgagctgcgagaatacgaagttcta
ctccagactcaagagaaggacgtgatcacatcgcttcagaaagacagtaaagcggagacc
tacactgtaaaacagctattctcagccatccttcagagggtccttcttccaggatgcact
cttctgctcagtacccggccgaggggctcggccaaccagctcctccgtcgggcagacagc
tttctggaggtctgtggctttactcccaccgatgtggaagcatacttgtcccagtacttc
actgagccggccctcagagccactgctttggactacttaaaaaactgcagctatctacat
ctcctctgctggaatcctggactctgtcggttggtgtgcctggtgttggaacagtccaaa
actttggacgtcctaccgagaactttaaccgggctctgccatcaagtgctacgtttgaaa
atggaaaagcacggtaaggccacagactcgcagcctgacgtcaaaacacaaacacccctg
caatctgaagaagaaaaacaaacacagatcccagataataatcaactgaacgttagtcac
aaaaacattccagtccgcaagtccagaccacgagtacacactggtactcgctcaagcaac
agaagagcgaggggggctgaaaagcaggtgacagaggggagtgaagtggacggggaggag
atggacagtgtgggaagggaggtggatagaacggaggagagagagctcctgtcgcagctg
agctctttggcttgggagggggtcaaagccaactcgtccatccttcccacgaggcggacc
ttggctgccaaacacaaggcttttggcctcaggacaggactcctcctctgccatcccctg
aggaagaggctgggtgtctcaacggaagaggggggtggaggagaggaccgaaaagaaatg
ggaggaggagaggagcaagacgtgaagagagacagagggacaacagagattataaacagt
gatgaaagtgatggccacatcctgttgtgggccagtcccttccttcagagctacttggca
ggagtccatctttctttttctaagactgtgtcagagcgcaccttcctccagaaccttcct
ttccactcaggactgaagggacgtcgccgccctcagagagaggaattccagctgactcag
caatttgcagtcggcctcctcttccacaacagggcagagctgcagagcctccactcacac
agagaggcggccttcagggatatggttgtcaaccgacaggctctagtgacaaagcacctc
aaaggcctttctcacggggacctgagtcccgcccaggtcctggaggcgtgtcactatgtt
tacgaagcaagtttcacatcatctggtgacgggagcagaggcagcgcacgattggtcgct
cacctggcagcgaatctcccagacgtcctgtcatttcacggagttcggctcaaccctccc
gacgtgttcactgtgcagaacatgctggaaagaggtggaggcttctgcttggatctgggg
gattctgggatcggggtttctggactgagagcgctggtggggctcgacaacgtcaactcg
tacagggcgtgcattgctgatgttattgccctatgggagcagctggagcagagtggggag
gaggggctcctgcgaggggcggtgtccaagttcaaggtccatcctctgaaagtcacacag
ctgtgtcatgtggagcacctggcacagctggtgaacatacatgtgcacaggaggctatcg
agcagttgcaccgattcagagtccatcttggcagacggagtaccagctgtcaaagagcta
cacaagctggagtttgagctcggcccagacaaaggacccctgggtatctccaagctgtgg
gagctcctgccagctctacgtaacctacagcacttggatctggagaacagtaagataggg
gacgagggatccgagaagttggctgatgctttagcgtcactttgttccctggagatactg
aatgtgtcacagaattgcatcggggaccacgggctgaagaaactggcaaccaccctcggg
tatctgcccaacctgcactgtttgagtctctacagtaacgtgatttctgacgaaggggcg
gagagtttagcagccctcctcccacacatggcatctctcactgacctggatgtgaagtac
aacaagctgacagacgtgggagcgcagagcctcggagccagtctgagaaactgtaaaaaa
ataaggacattaaggatgtggaaccagtgtattccatacggagtgtttgagcgtcttcag
cagcaagacggtcgcatcctctggcattga
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