Pleuronectes platessa (European plaice): 128458829
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Entry
128458829 CDS
T09923
Symbol
casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03013
Nucleocytoplasmic transport
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128458829 (casc3)
03015 mRNA surveillance pathway
128458829 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128458829 (casc3)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128458829 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
128458829
NCBI-ProteinID:
XP_053299817
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All DBs
Position
16:24613881..24619794
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AA seq
796 aa
AA seq
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MADRRRRRRRASQDSEDDDGSGSGSDSGRSASPTTKSRAKEPEPAEVPVVRPEAKNNVES
ECESEDGVGEAVLSDYESADPEDNGSHSEGVEEEEEAESDEEAPAAASESEPPAPSDPAP
GEEGEQVEDNEEQQQEEEEEEEEEQQQQQQQQQQQEEEEEQQEEEPEREDGGERTEESKA
EEKENLSGERQSGDGQESTDDPETKVGGTPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGH
AQEEERPKGRKGRLWKDEGRWEHDKFREEEQAPKSREELIAIYGYDIRNGGGPGDRSYRQ
RRPRQSVSPSRDKRWKEGGGERAVRSWQGGGGGQNRVPPPSSIHTSTSSSSIPLSSAQRS
NNPSRPPPPRSRPSYQSQMHLPPQSHYRNDESNAPQMHPXERQGPTAQSERAGDRGVVSR
GGRGGGGRGGPYLVMRTVAXSQPGVEEKDLSSSAVKPFQSASPRRQQKEQRGGADRSVSG
SAASTSDPPLQSSSVANREASPPTERPVERKSYALARRTRSRPTDLGSKQPSVDETTVSG
NASSPXSAGGRSWTGDTPGQTGSGGGGGGELAELDADVARLSLAGQSWNQSPTSYIRSEM
RGLPSPLHIPGPPPQFSSMEEMGVATNRAKRYSSQRQRAVPEPAPPMHLGVMDGHYYEPM
SYQGPIYAHGDGPPPIPPQGMLVQPEMHLPHPGLHPHQSGAPIANPALYAGPPVSLSPGQ
PQQLLPPPFYPPPGVMTFPYPAMYPTPQAQAQVTYGGVTYYDTMQQQAQPKPSPPRRTSQ
PVTVKPPPPEVPFASE
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggaggaggcgcgcgtcccaggacagcgaggacgacgacggg
tccggttcgggttcggacagcgggaggtcggcctccccgaccaccaagagccgggcgaaa
gagcccgagccagcggaggtcccggtggttcgacccgaggccaagaacaacgtggagtct
gaatgtgagagtgaagatggagtgggagaagctgtcctgtccgactacgaaagtgcagat
cctgaggacaacggctcccactcagagggagtggaggaggaagaggaggccgagagcgac
gaagaagccccagcagcagccagcgagtcagagcctccggcgcccagcgacccagcaccg
ggagaggagggggagcaggtagaagacaatgaggagcagcagcaggaggaggaggaggag
gaggaggaggaacaacaacaacagcagcagcagcaacagcagcaggaggaggaggaggag
cagcaggaggaagagccagagagggaggacgggggtgagaggacggaggagagcaaagct
gaggagaaggaaaacctcagcggagagagacagagcggcgacggacaggaatccacagac
gacccagaaacgaaggtgggggggacaccgggtcaaaagcttgacgatgacgaggacaga
aaaaacccggcgtacatccccaggaagggtttgttcttcgagcacgatgtccgaggtcac
gctcaggaggaggagagacctaaaggtcggaaagggaggctgtggaaagacgagggtcgc
tgggagcacgacaagttcagggaagaagaacaggcgcccaagagccgcgaggagctcatc
gccatctatggttatgacatcagaaacggcggcggcccaggagaccggtcgtacagacag
cgccggccaagacagagtgtgtcccccagcagagacaaacggtggaaggagggggggggg
gagcgagcagtccgatcctggcaaggaggaggtggaggtcagaacagagttcctccacct
tcatccatccacacctccacatcatcttcctccatccctctctcctctgctcagcgcagc
aacaacccctcccgaccgccacccccccgcagcagaccatcgtaccagagtcagatgcac
ctcccacctcaatcccactacaggaatgatgaatcaaacgcaccccagatgcatccanga
gagagacagggcccgacagctcagtcggagcgtgcaggcgacaggggtgtggtcagcaga
ggagggcgtggtggtggaggaaggggcggtccctacctggtcatgagaacagtggcangc
agccaaccgggtgttgaggagaaggacctgagctccagcgctgtgaagccttttcagtct
gcttcacccagacgacagcagaaggaacaacgaggcggtgccgaccgctctgtgtctgga
tcggctgcctccacctctgaccccccccttcagtcctcatcagtggccaatagggaagcc
tctcctcccacagagcggccggtggagcgtaaatcttacgcgctggctcgcaggactcgc
tctcgtcccacagacctgggaagcaaacagccgtcggtggacgagacgacagtgagcggg
aacgcctcgtccccgntcagcgcgggagggaggagctggacgggagacacaccgggtcag
acaggaagtggagggggagggggaggggagctggccgagctggacgcagacgtggctcgg
ctcagtctggccggacagagctggaaccagagtcccacgtcctacatccgctctgagatg
agaggcctccccagccccctgcacatccccgggccccccccccagttctccagcatggag
gagatgggcgtcgccactaatcgggccaaacgctactcctcccaacgccagagggctgta
cctgagccggctccgcccatgcacctgggagtgatggacggacactactacgaacccatg
tcgtaccagggaccgatctatgctcatggggatggccccccccccatcccaccacaaggc
atgctggtgcagcctgagatgcacctcccccaccctggtctccacccacaccaatcaggt
gccccgatcgctaaccccgccctctacgccggcccacctgtgtctctgtcaccagggcaa
ccgcagcaactcctgccccctcctttctaccctccaccaggggtcatgaccttcccttac
cccgccatgtaccccaccccacaggctcaggcccaggtgacctatggaggtgtgacgtac
tacgacacgatgcagcagcaggctcagcccaagccttcgcccccccgccgcacgtcccag
cccgtcactgtcaagccccccccaccagaggtgccctttgcctcagagtga
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