Pleuronectes platessa (European plaice): 128459270
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Entry
128459270 CDS
T09923
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pplt04121
]
128459270 (pdzrn3b)
Enzymes [BR:
pplt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128459270 (pdzrn3b)
Ubiquitin system [BR:
pplt04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
128459270 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
Sina_ZnF
zf-TRAF
CSS_CxxC
PDZ_Tricorn
zf-rbx1
zf-RING_6
U-box
IBR_1
zf-RING_10
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
128459270
NCBI-ProteinID:
XP_053300372
LinkDB
All DBs
Position
2:complement(24537162..24633774)
Genome browser
AA seq
1043 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLKNLILKLEIRCDNHAQGCDAVVRLQHLAEHTEMCEYSPAKCRNRGCGEVL
TLRDVDAHARETCDYRPAGICEGGCGLMLTHREQTSGGHCCLGALKAHNSALHCKILSLD
REFKKQTIKANKREKTLLAQLSSVHSELQMTALKYQKKFTEYSERIDSLTETVAFSCKEG
ETKSLTVVLLREGGSLGFNIVGGRPCADDNDGTSNEGIYVSKIVEDGPADKEGGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIVVQVLRRAPHPKSVSPAADTQVSDTSTQTDIT
LQHIMALTKLPPASPPMMELEEYLLTEEHPAGHAYFDPNDFLEGIQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGIEIQNR
EDAVVLLTSEGNQNISLLVARPELQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLMSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLG
SCRKLTYSQDTLGSNDLPFSSESFISTDYTDTDFLGIPADECERFRELLELKCQMRSSGA
QGLYCQSGGAGGQDPECVDKELELLNEELRTIELECLNIVRAHKMQQLKEQCRESWILHD
SGFRNYNTSIDAGRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGE
ENPAGASGSTSRLLKPVPSPIQEASGQSRSRGSSKDQDGALQAEGKERKLGESSKSGRSF
PHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLCRDPITTSDMDRKMEWKV
KIRSDGTRYITKRPIRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEERKQHAS
RAKEQRQRREFMKQSRVDSLKEQTYLEDKKEPNIIELSHKKMMKKRSKKIFDNWMTIQEM
LTHGTKSPDGTRVYNSLLSVTTV
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaagggcaccgtggacccggacttcaaatgcaacttg
tgcaacaaagtgctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtggtgcagcagagcagctgccccgtcaaatgtcagcggatctcc
gccaaggagctgaaccacgtcctgccgctgaagaacctcatcctgaagctggagatcaga
tgtgacaaccacgcgcagggctgcgatgcggtggtgaggctgcagcatctggccgagcac
accgagatgtgcgagtacagcccggccaagtgccggaaccggggctgcggcgaggtgctc
accctgcgggacgtggacgctcacgcgcgggagacgtgcgactacaggccggcggggatc
tgcgagggcggctgcgggctgatgctcacccacagggagcagacgtcgggcggccactgc
tgcctgggagccctgaaggcgcacaacagcgcgctgcactgcaagatcctcagcctggac
cgggagttcaagaagcagaccatcaaagccaacaagagggagaagacgctgctggcgcaa
ctttcctccgtgcacagcgagctgcagatgactgcgctgaagtatcagaagaaattcacc
gagtacagcgagaggatcgactccctcaccgagaccgtggctttctcgtgcaaggaaggc
gagacaaaaagcttgacggttgtccttctccgtgagggcggatctctgggttttaacatc
gtaggaggaaggccatgcgcggatgataatgacggcacctcaaatgaagggatctatgta
tccaagatcgtcgaggatggtccagcggacaaggaaggaggccttcaaatccacgacaga
ataatcgaggtcaatggcaaggacctgtccaaagccacccatgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcgtggtccaggtcctgcgccgggcccctcaccccaaa
tcggtcagccccgccgctgacacccaggtgtcggacaccagcactcagaccgacatcacc
cttcagcacatcatggccctcaccaagctgcctcctgcttccccacccatgatggagctg
gaggagtatctgctcacagaggagcatcctgcaggacatgcatactttgaccccaatgat
ttcctggagggcattcagcaggacatagaacgtgaggagctggaatatgaggaggtggat
ttataccgagccaacatccaagacaagctcggcctgaccatctgttacaggactgatgac
gaggacgaggctgggatctacattagtgagatcgatccgaacagcattgctgcaaaggac
ggcagaataagagaaggggacaaaatcatccagatcaatggtatcgagatccagaaccgg
gaggatgctgtagttctgctgaccagtgaggggaaccagaacatctccctgctggtggcc
agaccagagctgcagctggatgagggctggatggatgatgacaggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcaccgccagc
atgcttcagcagaagaagcacgaggaggacggaggcaccaccgacacagccacgctgatg
tccaaccaccatgagaaggacagtggggttgggcgcacagatgagagcacgcggaatgac
gagagctcggagcaggagaacctaggcgatgaccagaccacagcctccaacacgctgggc
agctgcagaaagctgacctacagccaggacacgctgggcagcaacgacctgcccttcagc
agcgagtcgttcatctccactgactacaccgacaccgacttcctgggcatcccggctgac
gagtgcgagcgcttcagggaactcctggagctgaagtgccagatgaggagcagcggagcc
cagggcctgtactgccagagcggcggggcaggaggtcaagaccccgagtgtgtggacaag
gagctggagctcctcaatgaggagctgcgcaccatcgagctggagtgcctgaacatcgtc
cgcgcgcataagatgcagcaactgaaggagcagtgccgtgagtcctggatactgcacgac
agcggtttccgcaactacaatactagcatagatgccggtcgccatgagctctcagacatc
acagagctgccagagaaatcagacaaggacagctccagtgcctacaacactggggagagc
tgccgcagcacgcctctcacgctggagctgtctccagataactcactccgcagaggagaa
gagaatccggccggggcatctggctctaccagcaggttgctcaaaccagtcccgtctccc
atccaggaagcttctggccaaagccgcagcagagggtcctccaaagatcaagacggagcc
ctgcaggcggagggcaaggagaggaagctaggagagtccagcaagtctgggcggagcttt
ccacattcgccttacaagcacgctcacatccccgcccacgcccagcactaccagagctac
atgcagctgatccagcagaaatcggctgtggagtacgcccagagccagatgagtcttgtc
agcttgtgccgagacccaatcacaactagtgacatggatcgtaagatggagtggaaggtg
aagatccgcagcgatggcacgcgttacatcaccaagcgccccatccgggataagctgctg
agggagcgcgccctccgcattcacgaggaacgcagcggcatgaccacagacgacgacgcc
ataagcgagctgaagatgggccgctactggagcaaggaggagaggaagcagcacgccagt
cgggccaaggagcagaggcagcgccgagagtttatgaagcagagccgagttgatagcctg
aaggagcagacctacctggaggacaaaaaggagcccaacatcatcgaactcagccacaaa
aagatgatgaaaaagaggagtaagaaaatattcgacaactggatgacgatccaggaaatg
ctgactcatggtaccaagtcaccagacggcaccagggtttacaactcactcctgtctgtg
accacagtctaa
DBGET
integrated database retrieval system
