Pleuronectes platessa (European plaice): 128460183
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Entry
128460183 CDS
T09923
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pplt03041
]
128460183 (ddx1)
03016 Transfer RNA biogenesis [BR:
pplt03016
]
128460183 (ddx1)
Enzymes [BR:
pplt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128460183 (ddx1)
Spliceosome [BR:
pplt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128460183 (ddx1)
Transfer RNA biogenesis [BR:
pplt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128460183 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
128460183
NCBI-ProteinID:
XP_053301226
LinkDB
All DBs
Position
17:complement(12734315..12741232)
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDEQEGKKGRGSVKSGGAIFNNWQMNPYDRSTAFAIGADGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVACHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDNSQMSFSKNGNDLGVAFEIPQNLKSQSFFASCVLKNAELRF
NFGGESFKNAPKSGFVALDQAPEGHCVKSSQAGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNVVKNFQKYVENPKLRELLVIGGVPAKDQLAALEQGIDIVVGTPGRLDDLISTGKLV
LSQVRFLVLDECDGLLSAGYTDFINRVHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSIPETVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRAGAN
SAEMWSEAIKLLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKTHQL
SCVCLHGDRKPNERKTNLERFKKKEVRLLVCTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKDEGGCTIWYQEKELLS
DIEEHLKCTITQCEPDIKVPLDEFDGKVSYGQRRKLTGGSYKGHVDALAPTVQELANLER
EAQSSFLQLGYMPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcggtgaaatgggcgtcatgcctgaaatcgcgcaggctgtggaggagatg
gaatggctgctgcctactgacatccaggctgagtctatccctctcatcctcggtggagga
gatgtactcatggcagcagaaaccggcagcggtaaaacgggggccttcagcatcccagtg
atccagattgtgtacgagaccctgaaggacgagcaggagggcaagaagggccgaggctcc
gtcaagtccggaggagcaattttcaacaactggcagatgaatccttacgaccgcagtaca
gccttcgcaatcggtgcagatggactgtgctgccagagcagggagtttaaagagtggcac
ggctgccgctctacaaaaggtgtcaccaaagggaagtactattatgaggtggcctgtcac
gatcaaggtctgtgccggatcggctggtccaccagtcaggcagcactggacctgggaact
gataaatatggctttggttttggaggaactggaaagaaatccaacaacaagcagtttgac
agttacggagaggagtttaccatgcatgatactattggatgctacctggatctggacaac
agtcaaatgtccttctccaaaaatggtaacgacctcggtgtggcttttgagattcctcag
aatctgaagagtcagagcttctttgcctcctgtgtgcttaagaatgcagagcttaggttc
aactttggtggagagagctttaaaaacgccccaaaaagtgggtttgttgcccttgatcag
gcaccagagggtcactgcgtcaaatcctctcaggcaggcagtgctaaagtcagtcaggtg
aaagcctcctccaatgcgcccaaagccctgatcatcgagccgtccaaagaattagcagag
caaactctcaacgtcgtcaaaaactttcagaaatatgtggaaaacccaaaactcagggaa
ctgctggtgatcggtggtgtgcctgccaaggatcagctggctgctctcgaacaggggatc
gacatcgtggtgggaacacccggccgactggacgacctcatttcaactgggaaacttgtt
ctgtcccaagtccgcttccttgtcctggacgagtgtgacggcctcctctcagcaggatat
acagattttatcaacagggtccataaccaaatcccgcaggtcacctctgatggcaagaga
ctgcaggtgattgtgtgctccgccactctgcattcctttgacgtgaagaagttgtccgag
cgcatcatgcacttccctacatgggtggacctgaagggtgaggactccatcccagagacg
gtccatcacgtggtggtgccggtcaatcctaagaccgatcggctgtgggagcgactggga
aagaaccacatccggactgatgaagtccatgccaaagataacaccagagcaggagccaat
tctgcagaaatgtggtccgaggcgatcaagctgctgaagggcgagtacacggtgcgcgcc
atcaaagagcacaagatggaccaggccataatcttctgtcgcaccaagatcgactgtgac
aacatggaacagtacttcatccagcaaggaggaggtccagacagtaaaacccaccagctg
tcttgtgtttgtctccatggcgatcgcaagcccaacgagcggaaaactaacttggagcgt
ttcaagaaaaaagaggtgagactgctggtctgcacagatgtagccgccagaggaattgac
atccacggagttccttacgtgatcaacgtcacgctcccagatgagaagcagaactatgtc
catcgtatcggaagagttggaagagctgagagaatgggactggccatctccttagttgct
atggaaaaagagaaggtgtggtaccacgtttgcccgaaccggggccgaggctgctacaac
acccgactgaaggacgagggcggttgcaccatctggtaccaggagaaagagctcctgtca
gacattgaggagcacctgaagtgcaccatcacccagtgtgagccggacattaaagtaccg
ttggatgagttcgatggaaaggtctcgtatggtcagcgcaggaaattgacaggtggaagc
tacaagggtcatgtggacgcgctcgctccaactgtccaggaactggctaacctggagaga
gaagcccaatcttccttcctgcaattaggatacatgccaaaccagcttttcaaagccttc
tga
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