Pleuronectes platessa (European plaice): 128460408
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Entry
128460408 CDS
T09923
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128460408 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128460408 (cpsf2)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128460408 (cpsf2)
U7-dependent histone pre-mRNA processing factors
128460408 (cpsf2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
PRP9_N
Motif
Other DBs
NCBI-GeneID:
128460408
NCBI-ProteinID:
XP_053301563
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Position
17:17109892..17117041
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFKLFTLDDVD
CAFDKIQQLKYSQIVHLKGKGHGLSITPLSAGHMIGGTIWKIVKDEEEEIIYAVDFNHKR
EIHLNGCMLESISRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEEFLEKDKQKKEAAKKLEQAKEVDVDSS
DESDLDDDLDQPAVVKNKHHDLMMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQSTEEEKSKLESGMTNGDEPMDQDLSVVPTKCISSVENLEIKARITYID
YEGRSDGDSIKKIINQMKPRQLAIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEDVEEGD
LAMEVASDLGIDISATAVAAQRALKSLFGEDEKELSEESDVIPMLEPLPPPEIAGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRDLL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgaccgccgtgtcaggcgtccaggaggagtccgccctctgc
tacctgctgcaggtggatgaattccgcttcctcctggactgtggctgggatgagaacttc
tccatggacatcatcgatgcaatgaaacgatatgttcatcaggtcgatgctgtgctcctc
tcccaccctgaccccttacacctgggagccctgccctacgctgtgggcaaactgggtcta
aactgtacaatttatgccaccattcctgtttataagatgggtcagatgttcatgtatgat
ctttaccagtctcgaaacaacagtgaagatttcaagctcttcactctggatgatgtggat
tgtgcttttgataaaatccagcagctgaaatactctcagattgtccacttgaaaggcaaa
ggacatggtctctccatcacgccactttcggccggtcacatgattggaggcaccatttgg
aaaattgtgaaagacgaggaggaggagattatttacgcagtggacttcaaccacaagaga
gagattcacctgaatggctgcatgctggagagcataagtcgtccttccttacttattaca
gattccttcaatgccacatatgtgcagccacgtcgtaaacaaagagatgagcagcttctt
acgaatgtgatggagactctccgaggtgacggtaatgtcctgattgccgtggacacagca
gggcgcgtgttggagctggctcagctcctggaccagatctggaggacaaaggatgctggg
ctgggagtttacccactcgctctgctaaacaatgtcagctacaacgtggtggagttttcc
aagtcccaggtcgagtggatgagtgacaaactcatgaggtgtttcgaggacaagagaaac
aaccccttccagtttcgtcacctgaccttgtgccacagtctggcagacctggcccgggtg
cccagccccaaggtggtgctctgcagccagccagacctcgagtccggcttttctcgagag
ctcttcatccagtggtgccaagacgccaaaaactccatcatcctgacctaccgcaccaca
cctggaaccctggcccgttacctcatcgacaaccccggagagaagatgctggatctggag
gtgaggaaaagagtgaagctcgaaggcaaggagctggaagaattcctggaaaaggacaaa
caaaagaaagaagctgctaaaaaacttgaacaagcaaaagaggtggacgtggactccagc
gatgagagtgatctggacgatgatctggaccagcctgcagtagtaaaaaacaaacaccat
gacttgatgatgaagagcgaggggagccgcaaaggcagtttcttcaaacaagccaaaaaa
tcatatccaatgttccccacacacgaggaaaggatcaaatgggacgagtatggggaaatc
atcaggctagaggagtttctggttccggaactgcaatccacagaggaggagaaaagcaaa
cttgaatccgggatgaccaacggggatgaacccatggaccaggatctctcggtcgttccc
accaaatgcatctccagtgtagaaaacctcgaaatcaaagcgagaataacgtacatagac
tacgaaggtcgctctgacggcgactccataaagaagatcattaatcagatgaagcccagg
cagctcgccatcgttcacgggccaccagaagccagtctggacttggctgagtcttgtaag
gctttcagcaaggacatcaaggtctacacacccaaactgcaggagaccatagacgccacc
agcgagacacacatctaccaggtgcggttgaaggactccttggtgagctctctgcagttc
tgcaaagccaaggacacggagctggcatggattgatggcgtgctggacatgcgcgtggtg
aaggtggacaccggcgtgatgctcgaggagggagtgaaggaggacgtcgaggagggcgac
ctggccatggaggtcgcctccgatctcggcatcgacatcagcgccacagcggtggccgca
cagcgagccctcaagagcctgttcggagaggacgagaaggagctgtctgaagagagtgac
gtgattcccatgttagagccgctgcctccgcccgagattgccgggcatcagtcggtgttc
atcaacgagccgcgcctgtctgacttcaagcaggtcctgctgagagagggcatccaggcc
gagtttgtgggaggagttctggtgtgcaacaacatggtggccgtccgcaggacggaggcc
ggacgcatcgggctggaaggctgcctgtgtgacgactactacaagatccgggatctgctg
tatcagcagtacgccgtggtgtag
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