KEGG   Pleuronectes platessa (European plaice): 128460433
Entry
128460433         CDS       T09923                                 
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
  KO
K12816  pre-mRNA-processing factor 17
Organism
pplt  Pleuronectes platessa (European plaice)
Pathway
pplt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pplt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128460433 (cdc40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pplt03041]
    128460433 (cdc40)
Spliceosome [BR:pplt03041]
 Complex C
  Other components
   Step II factors
    128460433 (cdc40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WDR55 WD40_WDHD1_1st EIF3I WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_NWD2_C WD_LRWD1 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 128460433
NCBI-ProteinID: XP_053301603
LinkDB
Position
17:15291753..15304402
AA seq 581 aa
MSAAISSLVSYGSDSDSENESESKTAAGKVDPVDPDAMAHLKPLQSEPTMTLALLNSAPE
VAVKEGVETGVHLDPALKEVTYNPTFETLFAPEFGPMNPFKSQQMSAPRNMLSGFAEPAH
LNNFMFEQQRRTFSTFGYALDPSVDTHNVSTTSYIGSVEDAEKNKGLTVFESGHTKSEKR
KKVKGGDAGEIDNFLGPWAKYADEKDAAKPTEEEKKELDEILAKRQKRGKNEEESPAEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSAEVPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNSGTQFLSAAYDRYLKL
WDTETGKCICPFTNKKVPYCVKFNPDEEKQNLFVAGMSDKKIVQWDIRTKEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYQRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq 1746 nt   +upstreamnt  +downstreamnt
atgtctgccgccataagttccctcgtttcgtacggcagcgattcggactcggagaatgag
tcggaatcgaaaaccgctgcggggaaagtggacccagtggacccggacgccatggcccat
ctcaagcctcttcagtctgaacccaccatgactctggctcttctcaattccgctcccgaa
gtcgccgtgaaggagggtgtggagactggagtacatctggaccctgcgctgaaagaagtc
acctacaacccgacatttgaaaccctgtttgcaccagagttcgggccgatgaatccgttc
aaaagtcagcaaatgtctgcccccaggaacatgttgtctggcttcgcagaacctgctcac
ctcaacaacttcatgtttgagcagcaaaggaggactttctccacctttggttatgctcta
gatccctctgtggacacacacaatgtatccacaactagctacatcggttcagtagaagac
gctgagaaaaataaaggcttaactgtgtttgagagtggacatacaaaatctgagaaaagg
aaaaaggtcaaagggggagacgcaggagagattgacaacttccttggaccctgggcgaaa
tatgccgatgagaaggatgcggccaaaccaacagaggaagagaagaaagagctggatgaa
atcttggccaagagacagaagaggggaaagaatgaggaagaatctccagcagaggagaag
actattctccatgttaaagacatgtatgattaccagggcaggtcctacctccacgttccc
caggatgtgggcatcaacctgcgttctgcagaagttccagacaagtgttatctgcctaag
aaacagattcatgtctggtccggacacaccaagggtgtcagtgcgatccgtctatttcct
agctctggccatctactgctctcctcctccatggactgtaagatcaagctgtgggaagtg
tacggcgagaggaggtgtatacggacgtttattggccacagcaaagcagtacgagacatt
tgcttcaataacagtgggacccagttcctcagtgctgcctatgaccgctacctgaaactg
tgggacactgaaacaggcaagtgcatctgccccttcaccaacaaaaaggtcccttactgt
gtcaagttcaacccggatgaggagaagcagaaccttttcgtggccggcatgtcggacaag
aaaattgttcagtgggacatcagaacgaaggaggtggttcaggagtacgaccgccacctg
ggagccgtcaacaccatcacctttgttgatgagaaccgtcggtttgtcagcacatcagac
gataaaagtctcagagtgtgggagtgggacatccctgtggacttcaagtacattgctgag
cccagcatgcactccatgccagctgtgactctctctccaaatggtaaatggctagcgtgc
cagtccatggacaaccagattcttatcttcggagcccagaaccgcttcaggctgaacaag
aagaaggtcttcaagggccacatggtggccgggtatgcctgccaagtcgacttctcccca
gacatgagctacgtggtctcaggagatgcggatggaaagctgaacatctgggattggaag
accaccaagctttaccaaaggatcaaggctcacgacaaggtttgcatcagcgccctgtgg
catccacacgaaacctccaaggtcatcacctgcggctgggacggacaaatcaaactctgg
gactag

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