Pleuronectes platessa (European plaice): 128461330
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Entry
128461330 CDS
T09923
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128461330 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128461330 (smarcc1b)
03036 Chromosome and associated proteins [BR:
pplt03036
]
128461330 (smarcc1b)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128461330 (smarcc1b)
Chromosome and associated proteins [BR:
pplt03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128461330 (smarcc1b)
PBAF complex
128461330 (smarcc1b)
GBAF(ncBAF) complex
128461330 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
128461330
NCBI-ProteinID:
XP_053302165
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All DBs
Position
18:12236428..12244062
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AA seq
952 aa
AA seq
DB search
MATMSGGTNLVAPGTSQPSSGATAHRKKDSSPSARFWESPDTLAQLEVVRLWVGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQATNPALTKLHAHCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFSSIKGALIQHNCMSMPVVYLDPTVDQELASRLTN
IITKRQGTLTEDRTLASHNIYPLPASTEEDEWMRPVMQKGKHILVHWGMHPDSYDSWLST
SDVQGAVEDAPHPERPWRVHAGWVVDTDVFNEWMNEEDYCVDERNVPIIHRRRIHLHDEQ
ESKSTPSKKRRRSTSPPSSEGRKKGKKGRRRGPQEIEPEEDLTKDMEDPTPVPNMEEVII
PKTVNLKKDSENTPVKGGTMADLDEQEDDFPGREEEEVRGEVPRLSEGEENITEQTHHII
VPSYTSWFNNNRIHLIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRINPQEYLSSTS
CRRNLTGDVCAVIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVTASQHMLFFPEKSKEKPLDCQSFGLRSDIYTKKHPKTKGTNAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSVSLGPLAFQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSRVQEDSADKIFEISNQSEKTELMDAEKM
ESNSICHQVGGRTDGNVELTVAIVEGNAVKRENAENILAEDTDGRGDDDDSVGRRDGDEG
RRVMELDLVEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRH
FEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQQGQAGFTMQN
SGQAVPNRMMPSGGNPQPMAPRHPGAPNGMYPSSQPDGITPAQPGPPASTHS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaacctcgttgctccggggacaagccagcccagctcc
ggtgccaccgcgcatcggaagaaagacagcagcccgtccgcccggttctgggagagcccg
gacactttagcccagctggaggtggtgcggctgtgggtcgggaagcactacaaaaagtat
gtgttggtggatgctccatcatgccaggccctggccgcagttactttacagctgctccag
ttccaggaggatgcctttggccgacaagctaccaatcctgctctcaccaagctgcatgca
cattgcttcctggacttgcgaccggggggaggactctgccacatcctgggaactgcctac
aaattcaaggcagagcaaggctggcgaaggtttgatttacagaatccgtcaagaacagag
aggaatgtggagatgtttagttcaattaaaggggcgctcatccagcacaactgtatgtca
atgcctgtggtatatctggaccccacagttgatcaggagttggcaagcagactgaccaat
atcatcacaaagcgccagggtactctcactgaggaccgaacgctcgccagtcacaacatc
taccccttacctgcctccacagaggaagatgaatggatgcgtcctgtcatgcagaaaggc
aagcatatcttggtacattggggcatgcaccctgacagttatgacagctggctgtccaca
agtgatgttcagggagcggttgaagatgcaccacatccagaaagaccatggagggttcat
gctggttgggttgtggacacagatgttttcaacgagtggatgaatgaagaagactattgt
gtggatgaaaggaatgtaccaataatccatcgccggcgtattcacctccatgatgagcag
gaatcaaagtccaccccatccaaaaagagaaggcgatccacctcccctccctcctctgaa
ggcaggaagaaaggaaagaaggggaggaggcgtggaccacaggagatagagccagaagag
gacctgaccaaagacatggaggaccctacacctgttcctaacatggaggaggtcataata
cctaagactgtcaacctgaagaaagacagtgagaacactcctgtaaaaggtggcaccatg
gcagatctggatgaacaagaggatgattttccaggaagggaggaagaagaggtacgagga
gaggtgccacggttatcagagggagaggaaaatatcacagaacaaacccatcacataata
gtaccaagctacacgtcttggttcaataacaacagaattcacttaatagagaaacgggct
ctccctgaattctttaacggaaagaacaagtccaaatctccggaaatttacttggcgtac
cgcaacttcatgatcgacacgtaccgaatcaacccccaggaatatctcagttcaacgtca
tgtagacgcaacctcactggagacgtctgtgctgtcataagggttcatgcgtttttggag
cagtggggtttgattaactaccaagtggatgcagagagcagaccactccccatgggaccc
cctcccacgcctcatttcaacgtactggctgacacaccgtccgggctggcccccctacaa
cacaagccactgcaggtgacagcctcgcagcatatgttgtttttcccagaaaagagcaaa
gagaagccgttagactgtcagagctttggtctgcgcagcgacatctacaccaagaaacac
cctaagaccaaaggaacgaatgcaggaagggaatggacagagcaagagacactcttgcta
ttggaggccttagaggtttacagagatgactggaacaaagtatccgagcatgtgggatcc
agaacgcaggacgagtgtatactccactttctccgtctgccgatagaagacccttatcta
gaagactcctcagtctctctaggtccactggcgttccaacccgtgcctttcagccaatcg
gagaaccccgtcatgagcactgtggccttcctggcatctgtggtggacccacgggtggcc
tcgtctgcagctaaggcggcactggaggagttttccagagtgcaggaggactcagcggat
aagatctttgaaatatccaatcagtctgaaaaaacagaattaatggatgcagagaaaatg
gagtcaaactccatttgccaccaggttggtggaaggacggatgggaatgtggagctcact
gtggcaatagtggagggaaatgcagtcaaaagggaaaatgcagaaaatatacttgcagag
gacaccgatggaaggggcgatgacgacgacagtgtagggcggcgagacggggacgagggg
aggagagtgatggagctggacctggtggagggcaacgttgccacggcagcagcggctgct
ctggcctcggctgccacaaaggcaaagcacttggcagcagtggaagagcggaagatcaag
tccctagtggcacttctggtggagactcagatgaagaagctggagatcaagctgagacac
tttgaggagctggagaccatcatggaccgagagaaagaggcgctggagcagcagcggcag
cagcttctctcagagagacagactttccacacggagcagctcaaacaggcggagatgaag
gtccgccagcagagggagcagcaggggcagcaggggcaagcgggattcacaatgcagaat
tcaggccaggctgtgccaaacaggatgatgcccagtggaggcaatccccagccgatggcc
ccccgacaccctggagctcccaatggcatgtacccgtcctcacagcctgatgggatcaca
ccagctcagcccgggcctccagcttccacgcacagctga
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