Pleuronectes platessa (European plaice): 128462053
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Entry
128462053 CDS
T09923
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128462053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128462053
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128462053
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128462053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
GrpE
Motif
Other DBs
NCBI-GeneID:
128462053
NCBI-ProteinID:
XP_053303271
LinkDB
All DBs
Position
18:21660008..21680543
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AA seq
984 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKVRRDCDKLHNAANANQKEKYEADLKKEIK
KLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQK
VDPAQREKEEVGMWLTNMIDTLNMQVDQFESEVESLSVQTKKKKGDKEKQDRIEELKKFI
EKHRYHIRMLETILRMLDNDSLQVDSIKKIKDDVEYYIDSSQDPDFEENEFLYDDLDLED
IPQTLLATSPPGQSTLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTD
SEVSQSPVKNGNPSSSLSSSSSSSSSSSSSSSCSSSSVSGLNPSSLVSMATMAGGGSSGS
GGNSHFTNSGGLLSNTSAGSYSNATQQPPHPSAQQQPAKNSVSSSSSAPIACPSINSHPA
SSTSSPPNASIQGLLSSNSLPPSGPSQTSNSFGLGLGLSLGKGGMSSSLTTSPMSGGLGL
SGMPASLSTMASLLSSSTPAPYAQAAASGAVGSGLPGLPGSLGGVSTTTSNSALGSIGSG
NITVGGPTSSSGGLLGASTSMGSIGSGILGLSSSQSGMQGMSLMSPSPVGGLAPGSGVGI
IGSNGGNSGPVGSGVVGGNSSLSVRPPSRQKQNGSTSYSAVVGDSTTDSALNMVSQSQNS
QPSSLTSSANQPKDTGPSLLGSITLSSSSPSPGSYSDAKMVSGSSLLNGPLSFSQSSDGM
KCHSSGALSFLKLPRSDFSCLPQKESILMDSENSTLFEDNMTMKDEPQEPLSSLKSMAER
AALSSGMEGDVTSLHLTPDIFPSSTTSSSGAPSAPQTSLSEVSIPPSLGVCPLGPVPVSK
DQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTE
TLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY
EKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggtgtagaacagttcgaagacatctggcaaaaggtgaggagggactgtgacaagcttcac
aatgcagccaacgccaaccaaaaggagaaatatgaagcagacctcaagaaagagattaaa
aagctacagcgtcttcgagaccagatcaagacgtgggtggcatccaacgagatcaaagac
aaacggcagctagtcgagaatcgcaaactcatagaaacgcaaatggagcggttcaagata
gtggaaagagaaaccaagacgaaagcctactcaaaagaaggactgggtctggcacagaag
gtcgatccggcccagagggagaaggaggaggtcgggatgtggctaacgaatatgatcgac
acactgaacatgcaggtggaccagtttgagagtgaagtggagtctctgtcggtccagacc
aaaaaaaagaaaggagacaaagagaagcaggaccggattgaggagctgaagaagttcatt
gagaagcatcgataccacatccggatgctggaaacaatactgaggatgctggacaacgac
tcattgcaggtggactccatcaagaagatcaaggacgatgtggagtactacattgactcg
tcgcaggatccagattttgaggagaacgagtttctgtacgacgacctggatctggaagac
attcctcagacgctgctcgccacctccccgccgggacagtccacattggaggacgagatc
ttccagcactccagcagcacacccacctccaccacctcatcttcacccatccccccctcg
cctgccacttgcactacggagaactcagaggatgacaagaagagaggacgttcaacagac
agtgaagttagtcagtcacctgtgaagaacggaaacccctcctcctcgttatcctcttcc
tcctcctcctcctcctcttcctcctcctcttcctcctgctcttcttcctccgtctcagga
ctgaacccctcctcgctggtctctatggcgaccatggctgggggtggaagcagcggctcg
gggggcaacagtcatttcaccaactcgggggggctgctctccaacacctccgctggcagc
tacagcaacgccacccagcagccgccgcacccatcggcccagcagcagccggccaagaac
tcagtgagctcctcctcctctgcacctatagcctgccccagcatcaacagccaccccgcc
tcctccacctcctctccccccaatgccagcatacaggggctcctgagttcaaactccctg
cctccgtcagggccctcgcagacctccaacagcttcggcctcggtctgggactctctctg
gggaaaggcggcatgtccagctccctcaccaccagcccgatgtccgggggcctcggctta
tcagggatgccggcatccctgagcaccatggcgagcctcctatccagctccaccccagca
ccgtacgctcaggcagccgcctcaggcgccgtcggctccggcttaccaggtttaccgggc
tccctgggaggcgtcagcaccacaacctccaacagcgcgttgggatccatcggcagtggg
aacatcacagtcggcgggccgacatcttcatcaggaggtctactgggcgcgtccacatcg
atgggcagcatcggctctgggattctgggtctgagctccagccagtcggggatgcagggg
atgtctctgatgtcaccgagcccggtgggaggcctggctccaggaagcggagtcggcatc
atcgggagcaacggaggaaactctggaccagtggggagcggagtggtgggaggaaactcg
tctctgtccgtcagaccgccgagccgacagaagcagaacggaagcaccagttacagtgct
gtggtaggcgacagcacaacagactccgccctcaacatggtcagccaatcacaaaacagc
caaccctcatctttgacctcctcagccaatcagcctaaggacactggtcccagtctactg
ggctctatcactttgtcgtccagctctccatcgccgggctcctacagtgatgccaaaatg
gtgagcggcagcagcctgctgaacggaccgctgtccttctcgcagtcctccgatggcatg
aagtgtcacagctcaggagctctgagcttcctgaaactaccaaggtccgacttttcatgt
ctaccacaaaaggaaagcattctaatggattcggagaactcgaccctgtttgaggacaac
atgaccatgaaagacgagccccaggagcctctgagcagcctgaagtccatggccgagcga
gcagcactcagctcagggatggagggagacgtgacttccctgcacctcaccccagacatc
ttcccgagcagcactacatcctcctccggagccccctctgcgcctcagacctcgctgtca
gaggtcagcatccccccctcactgggggtgtgtccgctggggccggtgcccgtgtccaaa
gaccagctctaccaacaggccatggaggaggcggcgtggacgcacatgccccacccctcc
gactccgagaggatcaggcagtacctgatgaggaacccctgccccaccctgcctttccac
caccaggtgccaccgccccactccgacactgtagagttttaccagaggctttccaccgag
accctcttcttcatcttttactacctggagggcactaaggcccagtatctggcagccaaa
gccctgaagaagcagtcgtggaggttccacacaaagtacatgatgtggtttcagaggcac
gaagaacccaagaccatcactgatgagtttgagcagggaacgtacatctactttgactat
gagaaatggggccagcggaagaaggagggattcactttcgagtaccggtacctagaagac
cgtgacctccagtga
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