Paenibacillus polymyxa SC2: PPSC2_00030
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Entry
PPSC2_00030 CDS
T01335
Symbol
gyrB1
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppm
Paenibacillus polymyxa SC2
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppm03032
]
PPSC2_00030 (gyrB1)
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_00030 (gyrB1)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PPSC2_00030 (gyrB1)
DNA replication proteins [BR:
ppm03032
]
Prokaryotic type
DNA Topoisomerases
PPSC2_00030 (gyrB1)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPSC2_00030 (gyrB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
DUF1918
Motif
Other DBs
NCBI-ProteinID:
ADO53994
UniProt:
E3EDS8
LinkDB
All DBs
Position
4426..6336
Genome browser
AA seq
636 aa
AA seq
DB search
MSMNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTSVKGLHHLVWEVVDNSIDEALAGYCNS
IQVVVHKDNSITVTDNGRGIPVSEHAKMKKSALEVVMTVLHAGGKFGGGGYKVSGGLHGV
GVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTEETGTQTTFYPDEQIFTE
TTVYDYDTLQTRIRELAFLNKGIAISLTDERTGASDTFHYEGGISEYVQFLNQKREALHE
QPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYAR
KNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQ
EFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSSKDASIS
ELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGI
GDDFDITKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVER
NKVVRYANSEAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVS
DAMLADTLFNTLMGDNVEPRRDFIQEHAKYVKNLDF
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaatcaaccgtcttatgatgcgggcgagattcaggtcctcgaaggcctggaa
gcggttcggaaacgtcccgggatgtatattggctccacgagcgtcaaggggctccatcat
ctggtctgggaagttgtggacaacagtattgacgaagcgctggcgggttattgtaacagc
attcaagttgtcgttcacaaagataatagcattaccgttacagataacggccgcggtatt
ccggtaagtgaacacgccaaaatgaaaaaatcagcgctggaagtcgtaatgaccgtactt
cacgcaggtggtaaattcggaggcggagggtacaaggtgtctggtggtctgcacggggtt
ggtgtatccgtggtgaacgctctctccagcaaaatgatcgttcatgtcaaacgggatgga
catgtatatgagcaggaataccatcgtggtgctccacagtatgatgtcagagtcatcggt
gatacagaagagacaggtacccaaacgaccttctatccggacgaacaaatctttaccgaa
acgaccgtatatgactatgatacgctgcagacgcggattcgtgagctggctttcctgaac
aagggcattgcaattagcttgaccgatgaacggacaggcgccagcgatacatttcactat
gagggtggaatcagtgaatatgtgcagtttctgaatcaaaaaagagaagcactgcatgaa
cagccgatttatgtcgaaggctctcgtgacatgattcaggtcgaagttgcattgcaatat
aacgacagctataccgagaatatttattcttttgccaacaatatcaacacccatgagggc
ggaactcatgaatcaggtttcaagagtgcattaacccggattattaacgattatgcacgc
aaaaatggcttgattaaggataacaacgccaatttgaccggtgacgatgtacgcgaaggt
ttgacagcgatcatctccgtcaaaatcccagaaccacagtttgagggtcagactaaaaca
aagctcggcaacagtgaagtgcgaggaattgtcgagtctctgttcgcagagaaactccag
gaattcctggaggaaaacccgtccgtctcccgccgtgtggttgataaatcattacaagca
gctcgagcccgggaagcagcgcgcaaagcgcgtgaacttacacgtcgcaaaagtgcgttg
gaaattagttcgctcccaggtaagctggcggattgctcctctaaggacgcttcgatcagt
gaattgtacatcgtcgaaggtgactcagcagggggatcggccaagcaggggcgtgatcgt
cactttcaagcgattttgccaattcgcggtaaaatcctgaatgttgaaaaggcacgcttg
gaccgtattttgtccagtgatgaaatacgttcgatggtaacagcaatgggtacagggatc
ggagatgattttgacatcaccaaagcccgttaccacaaggtcattatcatgacagatgcc
gatgtcgatggtgctcatattcgcacattgttgctgacgttcttctatcgctacatgcgc
aaaatcattgatgcgggctatatatacattgctcagccaccactattcaaagtcgagcgt
aacaaagttgttcgttatgcgaactctgaggcggaacgtgacgagatcattaaggaattt
ggagaaaatgcgaagtacaatgtacagcgttataaaggtttgggtgagatgaatgcgacc
caactttgggaaaccacgatggacccagagagccgtacaatgctgcaggtaactgtcagt
gacgcgatgctggctgatacgctgttcaataccttaatgggtgacaatgtagaacctcgc
cgcgactttatccaagaacatgcgaagtacgtgaaaaacctagatttctaa
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