Paenibacillus polymyxa SC2: PPSC2_00210
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Entry
PPSC2_00210 CDS
T01335
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPSC2_00210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_00210 (mfd)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSC2_00210 (mfd)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PPSC2_00210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADO54031
UniProt:
E3EDW5
LinkDB
All DBs
Position
41598..45125
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFTKDADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHN
MFAAQKIADDLQEALSPDQVLLYPANELVAAEAAISSPETLSQRIDVLIRCAQGFRGVVV
VPFSGVRRLLPIPETWREARVELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRGG
IIDFYPMTTRWGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTVTPCKEVIASHQRMDQA
ADAAAMLLEEQLDKMTDRQAKQHLKEEIHREIELLREHVYFDEIYKYISLLYPERKTLAD
YMPADTILIIDEPARMLETARQLERDESEWNLHLLQNGKTLPQLELSDNSDNLLYNRRFQ
TLFLSIFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKAEMDRWRKAGTQVMMLASGDER
LDRMRRVLQDYGIDEPTMAIGNLQSGFEMPSIHLAVITEGEMFSQKQRKARKQGRHVDNA
ERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQSAPGFAFEKDSP
EQQEFEDMFPYDETRDQVRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETTKGVRQGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE
INALVPDAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNRNWSTSIDLS
VDAYLPGDYIYDSIQKIEIYKKVAAVSTFDEASELEDELVDRFGDLPEAVRHLLAVARLK
VYGRMYGIESIVQRDDNMVLKFHEGRQQALQTAKLAEIGNRFERRVQFEQGTSMSVRIKG
KGLNDAQLLELLEQFLSALKEAFTLKEELQNVTTK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattcaggcttttacgaaggatgctgattatgcatccattgcggca
ggtatatcctcaggcatgaaggaacagctgatatcaggcttgtcaggctcttcaagacag
gtactgatggccgcacttgctgaagatactggacgaccgttaatggtcatgacgcacaat
atgtttgccgctcaaaaaatagcagatgatttgcaggaagcgctttctcctgatcaggtt
ttattgtatccagccaacgagttggtagctgctgaagctgccatatccagtccagagaca
ttatcccaacgaattgatgtattgatacgatgcgcccagggttttcgtggggttgttgtc
gtgccgttttctggggtccggcgtctactaccaatcccggaaacatggcgtgaggctcgt
gttgagctgaaagagggagaaacgattcagctggaagcatttttgctgcatatggttgag
atgggataccagcgtgtagaacgtgttgaatcccgcggggagatgagtgtacgcggggga
attatcgacttttacccaatgacaacccgttggggctatcgtgtggagttgtttgacgat
gaaattgactccatccgtatgtttgatccgcaagatcagcgttcggtggaaaaggtacag
gaagttactgtaacgccatgtaaggaagttattgcaagccaccagcgtatggaccaagct
gccgatgccgctgctatgttgttggaggaacagctggacaaaatgacagatcgtcaggct
aagcagcatctgaaagaggaaattcatcgtgaaattgagctgttgcgggagcatgtgtat
tttgacgaaatctataaatatatctccctgctatatcctgaacgtaaaaccttggctgat
tatatgccggcagatacgattctgatcattgatgaaccagcacggatgctagaaacagcc
aggcagctagagcgggatgagtctgagtggaatctgcatttgcttcaaaacggtaaaact
ctaccacaactggagctatcggataactcggataatctgctgtataatcggagatttcaa
accctgttcctgtcgatcttccttcgccaggttccgcatacgcagccgcaaaatattttg
aacttcatttgccggggcatgcaggatttccacggtcaaatgaatgtactcaaggcagag
atggatcgttggcgcaaggcaggcacacaggttatgatgctggcgagtggagatgaacgt
ctggatcggatgcggcgagtgcttcaagactacggtattgatgagccgactatggcgatt
ggtaatctgcaaagcggttttgagatgccgtctattcatctggcggtgattaccgagggt
gagatgttctcccagaagcagcggaaagcacgtaagcagggccgacatgtagacaatgca
gagcggattaagagctatagcgagctgaaggtgggcgactatgtcgtacaccaaaatcac
ggaatcgggaagtatatgggaatcggtacgctggaggttggcggtatccataaggattac
atgcatatcctctatgcaggcggagataagctgtctgtaccgattgaacaaattgatctg
attcagaagtatgtgggctcagaggacaaggagcccaaaatttacaaactgggcggcaat
gagtggacacgtgttaaaagtaaggtgcgcagctcggttcaggacatcgcagatgacctg
atcaagctatatgcggaaagacagtcagcaccaggctttgcttttgaaaaggattcgccg
gagcaacaggaatttgaggatatgttcccgtatgatgagacacgtgaccaggttcgggct
attgaagaaattaagaaggacatggagcagagtcgtccaatggatcgtttgctgtgcggt
gacgtaggctacggcaagactgaggtggctattcgtgctgcttttaagtctgctattgag
ggcaaacaagtggctgtgctggtaccgacgacgattttggcgcaacagcactatgagaca
ttccgtgagcgcttttctgggtatccgttcaatattcaggtattgagccgtttccgctcg
cgcaaagagcagaatgagacgaccaagggagttcgacaaggtacggttgatattgtcatt
ggtactcaccgtctactttcacaggatctggtgtttaaagatctggggctgcttattgtc
gatgaggagcaacgttttggtgtcacgcacaaagaaaagctgaaaaaactgaaaacgaat
gtagatgtgttgacgctaacggctacacctattccgcgtacgctgcatatgtccatgctg
ggtgtacgtgatttgtcagtcattgagacgccaccggaaaatcgttttccagtgcaaact
tatgtcgttgagcatagccagactctagttcgtgaggccattgaacgcgagatggcacgc
ggagggcaggtttattacctgtataatcgcgtgcagggtattcaggagatggctgccgag
atcaatgcacttgtcccagacgccaaggtgggcgtaggccacggacagatgtctgaaacg
gaactggagaaaaccattttggatttcctggatggtgaatatgatgtactggttagcacg
agcattatcgaaaccggtgtggatattcccaatgtgaatacactcattgtgcatgatgcc
gataaaatggggctctcccagctttatcagctgcgtgggcgtgtaggtcgttccaaccgg
attgcctatgcttatttcacgtaccagcgagataaggtgcttacagaggtagcggagaag
cgacttcagtctatcaaagaatttacggagttgggctccgggttcaagattgcaatgcgt
gatttgtccatccgcggagcgggtaacttacttggcgccgagcagcacggattcatcgca
tccgtcggttttgatctttactcacaaatgctggctgaggaaatcaataaacgtaaagtc
agtgtgcttggagaagaggatcaatccaaccggaattggagtacatcgattgatttgagc
gtcgatgcttacctgccgggagactatatttatgacagcattcagaagattgagatttat
aaaaaggttgcggcagtcagtacctttgacgaggcttccgagctggaggacgaactggtc
gaccggtttggcgatctgccagaggcagtgcgtcatttgctggccgtggcccgtctcaag
gtgtatggacggatgtatggcatcgagtccattgttcaacgggatgacaatatggtgttg
aaatttcacgaggggcgccagcaggcgctgcagactgccaaacttgccgagattggcaat
cgctttgaaagacgtgtacaatttgaacagggtacttctatgagcgtacgcataaagggt
aaaggtctaaatgatgcacaactgctagaactgctggagcaatttttgagtgcattgaaa
gaagcattcacattgaaggaggaactgcaaaatgtcacaactaaataa
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