KEGG   Paenibacillus polymyxa SC2: PPSC2_00235
Entry
PPSC2_00235       CDS       T01335                                 
Symbol
hupA
Name
(GenBank) DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
ppm  Paenibacillus polymyxa SC2
Brite
KEGG Orthology (KO) [BR:ppm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppm03032]
    PPSC2_00235 (hupA)
   03036 Chromosome and associated proteins [BR:ppm03036]
    PPSC2_00235 (hupA)
   03400 DNA repair and recombination proteins [BR:ppm03400]
    PPSC2_00235 (hupA)
DNA replication proteins [BR:ppm03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    PPSC2_00235 (hupA)
Chromosome and associated proteins [BR:ppm03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    PPSC2_00235 (hupA)
DNA repair and recombination proteins [BR:ppm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      PPSC2_00235 (hupA)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_2 HU-CCDC81_bac_2
Other DBs
NCBI-ProteinID: ADO54036
UniProt: E3EDX0
LinkDB
Position
50734..51006
AA seq 90 aa
MNKTDLINNISSKSGLSKRDVEAVLNGVLGEITDALASGDKVQLIGFGTFETRKRSSRTG
RNPQTGNTIEIPESTVPAFKAGNKLKEAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaacaagacagatctgatcaacaatatttccagcaaaagcggtttgagcaaacgtgac
gttgaagctgtattgaatggcgttcttggtgaaattacagatgcacttgctagtggtgac
aaagtacaactgatcggctttggtactttcgaaacgcgcaaacgttccagccgtacaggc
cgcaatccacaaaccggcaacacgattgaaattccagaatcgaccgttcctgcttttaaa
gctggtaataagcttaaagaagccgttaactaa

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