Paenibacillus polymyxa SC2: PPSC2_02425
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Entry
PPSC2_02425 CDS
T01335
Symbol
rpoN
Name
(GenBank) DNA-directed RNA polymerase subunit sigma
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm02020
Two-component system
ppm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPSC2_02425 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PPSC2_02425 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppm03021
]
PPSC2_02425 (rpoN)
Transcription machinery [BR:
ppm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPSC2_02425 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
HTH_3
HTH_Tnp_ISL3
HTH_26
Sigma70_r4_2
HTH_Crp_2
HTH_28
Xre-like-HTH
MarR_2
MarR
Phage_CII
Sigma70_r4
DNA_pol3_delta_C
HTH_36
HTH_IclR
HTH_17
HTH_24
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ADO54457
UniProt:
E3EDA0
LinkDB
All DBs
Position
complement(555968..557284)
Genome browser
AA seq
438 aa
AA seq
DB search
MRYGLQQEQTFRLAMTPELRQAITILQYSSVDLMSYLHEQANENPIIDLAEIDMSIERIN
TEEEYSPRKNDNPVDLLDFVSNPADNLYRHLKAQLGMVSGLSRLQQMIGMFLIGNLNEKG
YLELDVNIVAGILDVPTDEVENILALIQGFEPAGIAARSLEECLLLQLRYAGNDDVYLEE
IVRHHMVNLSCNRIQKIADALGIDIHMVQQITDQIRKLNPCPGAAFAPYERQHHIADISV
EKFKNDYIVTVNDITVPRVGINPFYQSMLRKPAMEEEKRFLREKMNTALWLIHSLEQRRL
TLMRVAQAIVDRQRDFFEHGVYHLKSMTQKEIAEITGLHESTISRAVSNKYMQTPRGLFE
LKYFFTSALGSKDGDATSSESAKMRIKQIIDGEEKQKPFSDQAITELMAKEGLELSRRTV
AKYREELGYLSSARRKVY
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgcgctacggattacagcaagagcaaacattcaggctggctatgactccagaattacga
caagccatcacgattcttcaatattcttcggtcgatctgatgtcatatcttcatgagcaa
gcaaatgaaaatccgatcattgatttggcagagatcgatatgtccatcgaaagaatcaat
acagaagaagaatattcgccacgaaaaaatgataatccggtagaccttctggattttgtc
tctaatcccgcagataatttatatagacatcttaaagcgcagcttgggatggtcagcggg
ctatccaggctacaacagatgattggcatgtttctgattgggaatttaaatgaaaaaggc
taccttgagctggatgtaaatatagttgccggaatacttgacgtccccaccgatgaggtt
gaaaatatacttgccctgattcaaggctttgaaccggcaggaatcgctgcccgcagtctg
gaggaatgccttcttttgcagctgcgatatgccgggaatgatgatgtttatctggaagaa
atcgtgcgacatcacatggtcaatctttcatgtaaccgcatacaaaaaatcgcagatgct
ctggggatcgacattcacatggtacaacaaattaccgatcagatacgcaagctgaatcct
tgtccgggagcggcatttgctccatatgaacgccagcatcatatagcagatatctcagtg
gagaaatttaaaaacgactacattgtgacagttaatgatatcacagtcccacgcgtcggg
attaatcctttttaccaaagtatgcttcgaaagccggctatggaggaagagaaacgattt
cttcgtgagaagatgaatacggcattatggcttattcatagccttgagcagcgccgcctg
accctgatgcgtgtggcccaggctattgttgataggcagcgggatttttttgagcatggc
gtttatcatctgaaatcgatgacccaaaaggagattgctgaaataaccggcctgcatgaa
tccacgatcagccgggcggtcagtaataaatacatgcagacgccccgtggattgtttgaa
ctcaaatatttcttcacctccgccctaggatcgaaagacggagatgctacttcatcagag
agcgcaaaaatgcggataaagcagatcatcgacggtgaagagaagcaaaaaccattttca
gatcaggcaatcacagaactgatggcaaaggaaggactagagctgtcacgcagaacggta
gccaaataccgagaagaattggggtatttatcctccgccaggagaaaagtgtattaa
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