Paenibacillus polymyxa SC2: PPSC2_06545
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Entry
PPSC2_06545 CDS
T01335
Symbol
nfo1
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPSC2_06545 (nfo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_06545 (nfo1)
Enzymes [BR:
ppm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
PPSC2_06545 (nfo1)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PPSC2_06545 (nfo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ADO55339
UniProt:
E3EDN1
LinkDB
All DBs
Position
1500846..1501973
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AA seq
375 aa
AA seq
DB search
MLKIGSHVSFSDKGLLSATKEASSYGSSSFMIYTGAPQNTRRKPMESMYLEEGKQLMAEK
GMEDIVVHAPYIINLGSYKENTYELAVSFLQEEIRRTHAIGVKNIVLHPGAFTDKDAEYG
IRRIADGLNEVLNGVKETDVNIALETMAGKGTEMGRSFEEIASIIDKVERNERLTVCMDT
CHIHDAGYDIVNDLDGVLEQFDRIVGLNRIQVVHINDSKNPVGAHKDRHTPIGSGWIGYQ
TIHNVVHHEALQGRPFILETPWIGKEAKTQRPMYEVEIALLRGNVKERFGDEFLGQVEQL
HSFFKKQDVDVRKFVLDTWTLLKNDAKARKADPREPLERLYDMITEAGLFPEMSEEHINQ
RLIACFAGSHLPVTV
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaattggttctcatgtgtctttctcggacaagggtctgctcagcgctacaaaa
gaagcgtcttcttacgggtccagctcgtttatgatatacacgggggcaccgcaaaacacg
cgccgtaagccgatggagtccatgtatttagaggaaggcaagcagctaatggcggaaaag
ggaatggaagatatcgtggtgcatgctccgtatatcatcaatctcggctcctacaaagaa
aatacctatgagcttgcggtcagctttcttcaggaggaaattcggcgcacacatgcgatt
ggtgtgaaaaatatcgtgctgcatccgggggcttttacagataaagatgcagagtacgga
attaggcgaattgccgatggtttgaacgaggtactgaacggtgtgaaggagacagatgtc
aacattgcacttgaaacgatggctggcaaaggcacagaaatgggtcgtagctttgaggaa
attgcctccattatagataaagtagagcgcaacgagcgtctgacggtttgtatggacacc
tgtcacattcatgatgcgggttatgacattgtcaatgatttggacggtgtactggagcag
tttgaccgtattgtcggcttgaatcgcatccaagttgttcacataaatgacagcaaaaac
ccggttggcgctcataaagaccgccatactccgattggatcaggctggattggttatcag
actattcataatgtggtacatcatgaagcacttcaaggacgtccgtttattttggagaca
ccgtggattggaaaagaagccaaaactcaacgaccaatgtatgaagttgagattgctttg
cttcgtggtaatgtaaaggaacgctttggagatgagtttttgggtcaggtggagcagctg
cattcgtttttcaaaaaacaggatgtggatgtccgtaaatttgtactggacacctggact
ctgctgaaaaatgatgccaaagcaagaaaagcagacccacgtgagccgctggagcgtctg
tatgacatgataacggaagcaggactgtttccagagatgagcgaagaacacattaatcaa
cggttgattgcctgttttgccggtagtcatctgccagtgacggtataa
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