Paenibacillus polymyxa SC2: PPSC2_08225
Help
Entry
PPSC2_08225 CDS
T01335
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03030
DNA replication
ppm03430
Mismatch repair
ppm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSC2_08225 (dnaE)
03430 Mismatch repair
PPSC2_08225 (dnaE)
03440 Homologous recombination
PPSC2_08225 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppm03032
]
PPSC2_08225 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_08225 (dnaE)
Enzymes [BR:
ppm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPSC2_08225 (dnaE)
DNA replication proteins [BR:
ppm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPSC2_08225 (dnaE)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPSC2_08225 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF6282
HROB
Motif
Other DBs
NCBI-ProteinID:
ADO55714
UniProt:
E3EEM7
LinkDB
All DBs
Position
1841264..1844929
Genome browser
AA seq
1221 aa
AA seq
DB search
MSSFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGI
KPIIGCEAYMTAGSRKERGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHLEGFHYKPRI
DMDALAAHHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGDDFYLELQDHGLS
EQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRIPTR
QLYLKSQEEMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEYRPLPEDMTSSSYLRS
LCVQGLERRYGGDPVWEQPEERERLDQRLNYELNTIDSMGFSDYFLIVWDFIAFAHKHKI
TTGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDERRDEVID
YVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGINIRHALE
ITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPLQEGSEGVP
LTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWIAEQHGETPDFSRVPDDDPHTYDLLG
KGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVVALYRPGPMGFIPNFIQAKHGQIEISY
PHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDLERGHFV
EGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVQFMASMLT
AVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQHGDIRFGLAAIKNVGTQAMES
ILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLAMLDETVDAA
AKWRKERDDLQIDMFGFVEMPNWDIEYPNVPPFSTSQQLELERELLGLYLSGHPLDDFES
LLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKAMAFIELEDQIERCEVVLFP
EVWKRSQQWIEKGALLALRAKMQQQDEHFKLLADEAVPLAEDALSRLLQRRRTGARSSAA
AGTSVPAAGNTGGRAPRVSTSLSAAAPSASPQQKEARPVAASSQRRGEAAHSEQVPSPRG
SESPARQRVFVKITRQAEEDASLLVSLKALLQEHPGAVPTVLFYESNQRLLALSDAYSIK
PSPQLFDRMESMLGEGTVKVK
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatttgtgcatttgcatgttcacagcgagtacagcctgctggacggcgcggct
cgtaccgcggaattggtcaaacaggcatcagcttacggaatgaaggcgctggctcttaca
gatcatggggtcatgtacggtgccattcctttttatagagcatgtgtagagaacggcatt
aagccgattatcgggtgtgaggcttatatgacggcaggatcgcgcaaggagcgtggcagc
cggaaggatcagcctatatatcatttaattttgctcgccaaaaataaaacaggctatcaa
aatctaatgaagctgtgctccattggccatttggagggttttcactataagccgcgcatt
gatatggatgctttggctgcccatcatgaaggcatcatatgcctgagcgcttgcttgggc
ggtgaagtgccgcagcatttgctgcatggcagagaagccgaagcacgacgtgcagcggaa
cgataccgtagcatttttggcgatgatttttatctggagcttcaggatcatggtctgtcg
gagcaaaaacgcgtaaatcctcaattgatcgcactggcaaaggaactggatattccgcta
gtggcgacgaatgacgtgcattacttaaccgagccggatgctgatgtccaggacgtcctg
atctgtatcgggacagggaagacagttgacgatgaggaacgcttgcggataccaacacgt
cagttgtatctgaaaagtcaggaggaaatggctcgtttatttccacatgtagcagaagcc
atcgccaatacagtgcgtattgctgagaagtgcgagctggaactggaattcggccaatct
attttgcctgaatatcgcccgctgccggaggacatgacgtcttcgtcctatttgcgcagt
ctgtgcgtgcaagggctggagcgtcgctacggaggcgatcctgtgtgggagcagccggag
gagcgggaaagactggaccagcggctgaactatgaattgaatacgattgacagcatgggc
tttagtgattacttcctgattgtatgggattttattgcttttgctcataagcataagatt
acaacaggaccggggcgggggtcctccgcaggtagtttggttgcctatgtgcttaatatc
acgaatgttgatccaatgaaatacaatctgctctttgaacggtttctgaaccctgaacgg
atcagtatgccggatatagatattgattttagcgatgaacgccgcgatgaggttatcgac
tatgtagtacagaagtacggaaatgagcatgtagcgcaaattattacctttgggacatta
gcggcaagagccgcagtccgtgacgtcggccgtgtattgaacgtgccgtatggcgaggtg
gacaaggcggccaagttgatcccggcgcagctcggtattaatatccgacatgcgctggag
attacccccgagctgaaggctctgtatgaaacgaagcccaagacacgtgaactgctggat
atggcgatcaaagtagaaggaatgcctcgtcatgcttcgacacatgctgcaggtgttgtc
atctcgcggactccactgaccgatgcggttccgctgcaagaggggagcgaaggggttcct
ttaacgcagtactcgatggaaaatctggagcgcattggtttgctaaaaatggatttcctc
ggactacgtacgctctccattattgaacgttgcatgcgctggattgcggagcagcatgga
gaaacacctgactttagccgtgttcccgatgatgacccgcatacctatgacttgctgggc
aaaggagatacaggaggcgtgttccagctggagtcggccggtgtacgccgggtgctcaag
gatttgaaaccgagtgtttttgaggatatcatttctgtcgtggctttgtatcgtccgggt
ccgatgggctttattcctaactttatacaggctaagcacggacagattgagatttcttat
ccgcatcctgatcttgaaccgatcttaaaggatacgtacggtattattgtgtaccaggaa
caaatcatgcagattgcttcgcgcatggctggcttttctttgggagaggctgatctgctg
cgccgcgcggtgtccaagaaaaagcgcgaggtgctggatctagagcggggccattttgtc
gaaggcagtattaaacagggctacacggaggaggaagctggaagggtttacgatatgatc
gtccgttttgctgactacggctttccgcgtgcccatgcagctgcttatggtgtgctagca
ttccagacggcctatcttaaggcacattatccagtacaattcatggcttccatgctgacg
gccgtaatgggaagtcatcgaaaagtggctgaatatgtcgtcgaatgtcgtcgtatggat
atcgcagtgttgccgcctgatgtgaatgagagtggggtgctgtttaccccattacagcac
ggtgatatccgctttggactggctgcaattaaaaatgtcggcacacaagcaatggaaagc
attcttgctgttcgtaaggaacgtcctttcgacagtctgctcgatttttgtcgacgtgtt
gatttaagggtgtgtaataagagagtgattgaatcgctcattcaggcaggagcatttgat
tcattgacaggccatcgggcacagttgcttgccatgcttgatgaaacggtggacgcagct
gccaaatggcgcaaggaacgtgacgatttgcaaattgatatgtttgggtttgtggaaatg
cctaattgggatatcgaatatcccaatgtacccccatttagtaccagccagcaattagag
ctggaacgcgaactgctgggactgtatttgtctgggcatccgctagatgattttgagtcg
ctgctggaaagcagccaagcggatcgtctgatggagctgagcgatgtgccagatgaaacg
gttattgtgaccgcaggcatggtggtgtcactcaagacgattacgaccaagcagggaaag
gctatggcctttattgagctggaggatcagattgaacgctgtgaggttgtgctgtttcct
gaagtttggaagcgaagccagcagtggattgaaaaaggtgccttgcttgcacttcgcgcc
aagatgcagcagcaggacgaacacttcaagctcctagcggatgaggcagttccgttggcg
gaagacgcgctgtcacggcttcttcagcgccggcgtaccggagcacgttcgtccgcagca
gctggaacatccgtgccagctgctggcaatacgggcgggagagcgccacgtgtgtcgacc
tcgctttcggcagcagctccatcagcgtcgccccagcagaaggaggctcgtcccgtagcg
gcttcttcacaacgcagaggcgaagcggctcacagtgagcaggtgccttccccgcgcggc
tcggaatcgcccgcccgtcagcgggtgtttgtcaaaatcacccgccaggccgaggaggac
gccagcttgctggtcagcctcaaggcattgctacaggagcatcccggtgctgtacctacc
gtacttttttacgagagcaaccagcgtctgctggcgttgagtgatgcttacagcattaag
ccttctcctcagctttttgatcgaatggaatcgatgctgggtgaaggcaccgtgaaagtc
aaatga
DBGET
integrated database retrieval system
