Paenibacillus polymyxa SC2: PPSC2_09370
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Entry
PPSC2_09370 CDS
T01335
Symbol
yvgS
Name
(GenBank) helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03420
Nucleotide excision repair
ppm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPSC2_09370 (yvgS)
03430 Mismatch repair
PPSC2_09370 (yvgS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_09370 (yvgS)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSC2_09370 (yvgS)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPSC2_09370 (yvgS)
MMR (mismatch excision repair)
Other MMR factors
PPSC2_09370 (yvgS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
AAA_16
AAA_30
SLFN-g3_helicase
DEAD
NACHT
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ADO55958
UniProt:
E3EIT9
LinkDB
All DBs
Position
2060080..2062434
Genome browser
AA seq
784 aa
AA seq
DB search
MTTEQQWNEEQRRVEDVTAVISGRIRKLETEVGSVRGDVVDMRKDFWDEVTINFSEADDV
GETSTSLRQQSEILSERERRHKHSTEALGRLKKLLDSPYFARIDFAEEGQTAERIYLGIA
SLLDNQDEEFLIYDWRAPISNLYYDNMPGPASYKTPAGEMEGELTLKRQFSIRDGQIRFM
FDTGVTIGDELLQAVLSRSSDAQMKSIVATIQKEQNRIIRDDRSRMLIVQGAAGSGKTSA
ALQRVAYLLYKYRDRLRADQVVLFSPNPMFNSYVSTVLPELGEENMLQATFQEYLERRLG
REFQLEDPFEQLEYVLSASSQPGYEARMEGIRFKSSKTFLHVITGYKAHLEQEGMRFKPV
RFQGREVISVEQMASKFYEFDSAVRLANRLELLRDWMLKELARFGKEECSAPWVDQQMDL
MEPEDYQRAYNRMRRKSKNKGDTFDDFTREREILARMVVSDRLKPLRKWIKALRFVDTTR
LYSELFMNETLLSQLSNHAELPVNWSEISRQTLKRIQAGELAYEDVTPFLYLRELMLGFR
SNSNIRHVFIDEAQDYSPFQLAFFKRLFPQAKMTALGDFNQAIYAHASVLQDAEPLYDLY
GADQTEMISLTRSYRSTQEIVEFTRGMVAGGEHIVPFNRKGEKPLVTEVNSREKLHQLIA
GNVTKLLAEGYESIAVICKNADESAAAYEALEGQLPVKPKLIKKTTPAFEKGIHIIPAYL
AKGVEFDAVLIYDGSVQEYQRESERKLFYTACTRAMHLLHIYSIGEITPFVSSQESETYI
RKVE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgactactgagcagcaatggaatgaggaacaacgaagagtagaagatgtgaccgcagtc
attagcgggcgtattcggaagctggagacagaggttggttctgtgcgcggcgatgttgtc
gatatgcgtaaagacttctgggatgaggtaacgatcaatttcagtgaggcggatgatgtg
ggagagacgtccaccagtttgcgtcagcagtctgagattttgtctgagcgggaacgaaga
cacaagcattccactgaggcgctagggcgtttgaaaaagttgctggactcaccctatttt
gcacgcattgattttgctgaggaagggcagactgcggaacgcatttatctggggattgcc
tccctgctggataatcaggatgaggaatttctgatctacgactggcgtgcgcctatttcg
aatctttattacgataacatgccaggtcccgcttcttataagaccccagcaggagagatg
gaaggagaactgacgctcaaacgccaattctcaatccgtgacggacagattcgctttatg
ttcgatacaggcgtcaccattggagacgaactccttcaagccgtattaagccggagctcg
gatgctcaaatgaaaagtattgtcgctaccattcaaaaggagcagaatcgcatcatccgt
gatgaccgaagccgcatgcttattgttcagggagcggcaggaagcggcaaaacctctgca
gcgcttcagagagtagcgtatttgctgtataagtatcgggatcgcttgcgagcggatcag
gtcgtgttattttcgccaaaccccatgtttaacagttatgtttcgacggtattgcctgaa
ttgggtgaggaaaatatgcttcaggccacgtttcaggaatatttggaacggcgtttgggc
cgggagtttcagttagaagatccttttgagcagctggaatatgtgctatcagcgtcgtca
cagcctgggtatgaagctaggatggaaggtatccgttttaagtcatccaagacgttctta
catgtgattacaggctacaaggcgcatctggaacaggagggaatgcgttttaaacctgtt
cgttttcagggacgtgaggtgatctcagtagagcaaatggcaagcaagttttatgaattc
gactcggctgtgcggctggcgaaccgattggaactgctacgcgattggatgctcaaagag
ctggcccgctttggtaaggaagaatgctccgctccttgggtggaccagcagatggatctg
atggagccggaggattatcagcgtgcatataaccgcatgcgccgtaaatccaagaataaa
ggcgataccttcgacgactttacacgtgaaagagaaatattggcacgtatggtggtcagt
gaccgcttaaagcccttgcgcaagtggattaaggcactccgcttcgtggatacaacccgt
ctatacagcgagttgtttatgaacgagacgttattaagccaactgtcgaatcatgcagag
ctacccgtcaactggagtgaaattagtcggcaaactctgaaacgaattcaggctggagaa
ttagcgtatgaggatgtgacgccctttttatatttgcgtgagctgatgctgggcttccgt
tccaatagtaacatccgtcatgtgtttattgatgaggcacaggactattcaccattccag
ctggctttctttaaacgattatttccgcaggctaaaatgacggcactcggcgattttaat
caggccatctatgcccatgcttcggtgcttcaggatgcagaaccattgtatgacctgtat
ggagcagaccagaccgagatgatttccctgacacgcagctatcgctcaacacaggagatt
gtagagtttacccgggggatggtagcagggggagagcatattgttccgtttaaccgtaag
ggtgagaagcctctggtaaccgaggtgaactcgcgtgaaaagctacaccaactgattgcc
gggaatgttacaaaattgctggcagagggttatgaatccatcgcagtgatctgtaaaaat
gctgatgaaagcgcggcagcctacgaagcactggaaggacaactgccagtaaagccaaaa
ttaattaagaaaacaacccctgcttttgaaaaggggattcatatcattccggcctacctg
gcgaaaggcgtggagtttgatgcggttctcatttatgacggatcagtccaagaataccag
cgtgagagtgagcgtaaattgttctacacggcctgtacgcgagcgatgcatttgctgcat
atatatagcataggggagattacgccattcgtgagttcgcaggaatcggagacgtatatc
cgtaaagtggaataa
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