Paenibacillus polymyxa SC2: PPSC2_16615
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Entry
PPSC2_16615 CDS
T01335
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm00470
D-Amino acid metabolism
ppm00550
Peptidoglycan biosynthesis
ppm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PPSC2_16615 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PPSC2_16615 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppm01011
]
PPSC2_16615 (murD)
Enzymes [BR:
ppm01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
PPSC2_16615 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppm01011
]
Precursor biosynthesis
Amino acid ligase
PPSC2_16615 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Pyr_redox_3
2-Hacid_dh_C
XdhC_C
Pyr_redox
Motif
Other DBs
NCBI-ProteinID:
ADO57506
UniProt:
E3E8F7
LinkDB
All DBs
Position
complement(3756928..3758349)
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AA seq
473 aa
AA seq
DB search
MNHPDAYRDQEVVIIGLAKSGVQVAKVLHQAGAKLTVNDKKDREQCPEASELEALGISVL
CGGHPEGLIHPGVKLVVKNPGIPYTAPPVQKAVELGIEVVTEVEVAYHLCKAPIIGITGS
NGKTTTTTWVGKLLEASGMNPIVAGNIGTPLCEAAVDAKSDEWMVVELSSFQLKGTKDFK
PAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVVNWDDSVCRELVPYIQAKL
LPFSMTERLQEGLFADPPYIPDVTDDIERNIVYRDGNGVLHPIIGVTDIGLPGRFNVENA
LAACAIAIAAGAEPAKLAEPLGSFRGVEHRLEYVLEHGGVAYYNNSKATNSKATMMALSS
FKQPIVLIAGGLDRGSDYAELVPSLQEGVKAVVLLGETRHKLADRARQAGIEHVKVVDNG
EDAAATLVEAVNKAAQFAETGDVVLLSPACASWDMFQSYEERGRIFKEAAHKL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatccagacgcataccgagatcaggaagttgtcattatcggtctggccaaaagc
ggcgtacaagttgccaaggtgctacatcaggccggggccaagctcacagtcaatgataaa
aaagatagggaacaatgtcccgaagcttctgaattagaggctttgggaatttccgtttta
tgcgggggtcacccggaagggctgattcatcctggagtgaaactggttgtcaaaaatcca
ggaattccttacacggcccctcccgtacagaaagctgtcgagctcggcattgaggtcgtg
accgaggttgaggtcgcctaccatctatgcaaagctccgattatcggaattactggctcc
aacggaaagacgaccacgaccacttgggtgggcaagttgttggaggcatccggcatgaat
ccgatcgtggctggtaatatcggtacgccattatgcgaggcggctgtggacgccaagtcg
gacgagtggatggttgtggagctgagcagctttcagttaaaaggaacaaaggatttcaag
cccgcagtagcctgcttgctcaatgtagctgagacccatttggactaccacggaggtatg
gaggactatgttgcatcgaaggcacgtctatttgccaatcaaacagcgtcggataccgca
gtcgtgaactgggatgattccgtctgccgggagcttgtgccctatattcaagcgaagctg
cttcctttctcaatgacggaacgtttgcaggaagggctgttcgctgacccgccatacata
ccggatgtgacggatgatattgaaagaaacatcgtataccgtgatggaaatggggtactg
catcccattataggcgtgaccgatattgggcttccgggtcgttttaacgtagaaaatgct
ctagctgcttgtgcaatcgccattgccgcaggcgcagaaccagcaaaattagcggaacca
ttaggctcttttcgcggtgtagaacatcggcttgaatatgttttagaacacggtggagta
gcttattacaacaattccaaagcaaccaattcgaaagcgacaatgatggccttatcttcc
tttaagcaacctatcgtactcattgccggaggattggatcgtggctctgattatgcggag
cttgtaccatccttgcaggaaggtgtgaaagctgttgtactcttgggtgagacacggcat
aagctggcagatcgggctcgtcaggctggaatagagcatgtcaaggtcgtcgataatggg
gaggatgccgccgctacgctcgtggaggctgtaaacaaggcagctcaatttgctgagacg
ggagatgtggtattactctcacccgcttgtgcaagttgggatatgttccaatcctatgaa
gagcgtggacgtatttttaaagaggcggcgcataaattgtaa
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