Paenibacillus polymyxa SC2: PPSC2_16920
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Entry
PPSC2_16920 CDS
T01335
Symbol
sbcC
Name
(GenBank) DNA repair protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppm
Paenibacillus polymyxa SC2
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_16920 (sbcC)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPSC2_16920 (sbcC)
Archaeal homologous recombinant proteins
PPSC2_16920 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ADO57574
UniProt:
E3E9E3
LinkDB
All DBs
Position
complement(3826103..3829492)
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AA seq
1129 aa
AA seq
DB search
MKPILLKLAGLQSYRESQEIRFDDLTETGLFGIFGPTGSGKSTLLDAITLAMYGKVERAV
NGTQGIMNHAEDTLAVAFTFELMSAQGPRRYRVERRFKRAGGVSVNNTLSRFIAYTEDGE
EVLADKVQDVTRCVEEYIGLKMDDFTRAVVLPQGKFAEFLSLKGSERRQMLQRLFHLEKY
GDQLTQKLSRRVKDNDIALKSLEAEQQGLGDASAEALELVKLRLKEAIDHAEASRRELER
VSREAEALNKTRELVIELRQRVNELEEMARQEPGIALLERKLRQVSAAEALLPALTDWKE
AVVEAEKRQKNAEQMAVLAASAAEAALVSVQADEQARQALSAEEPKLLLRIDQLEQALQL
ERDTEVLRTERERLAVELAHSEQTLAEHAAGLVKEQELQTRGLKRQQELQQELKQNEVRA
DERRMLQEAVQRLQQLETANEQWREAEQEYSTQEKRLALADERLKLMEQETQETEARRSI
LAAQVAEGIEALLALEAEITADVSALAAEEEQLRHELRAEELGRLAQHLAAELREGEPCA
VCGSLHHPAPAAVAAHGADSSAPDELHRLRLGLQELRLTLRQQLHEQRSLLAQPAAADSG
AAATGEPFTPAAAMPRGVAVWAERCTALERAAGELAARAHTLPAEAQALREADAAGQQRR
IRAAAEQEAAVAALAQARSKREACTTRSEGLRAEWATQLPDVGPDQAAERYRAMQERDRR
AEELRSRLEMSVTFLEEKAARVQQIQQSIIEEDKIIIARRTGLQSKDDLLREKQEQLRKW
VGEGQAASLLEEATSRLLGLKNGAEAAARRRTEAEERKQQAVHASLIARQASDSAEERRQ
TAESRWGIRLEASSFATEAEVMECCLGPEEAARYEREVSLHREREKELSSRLKHVEEQLN
GATVTEEQWETTTARLRDCRARDEEALQNRAKAERDLEDLQRRHVRWMELESNRLHLRSE
AEKMSKLQSVFRGNAFVEYIAEEQLMQVSQSASRRLRFLTKQRYALEVDSSGGFVISDDA
NGGVKRPVSTLSGGETFLTSLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDPELLDTVI
TSLEKLHHDQLSVGVISHVPELRARLPRKLVVLPAEQTGGGSRVVMETF
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatccttctgaaactggcaggattgcaaagctaccgggagtcgcaggaaatt
cgctttgacgatttgaccgaaacgggactgttcggaatttttggtccaacgggtagtggt
aaatcaacgttgctggatgccattacattggctatgtacggtaaagtggagcgggcggtg
aatggtacacaaggcattatgaatcatgccgaggatacgttggctgtagcatttacgttt
gaattaatgtcagctcaaggacctcgccgttaccgtgtagaacgacgtttcaaacgtgca
ggaggcgtatcggttaataatacgcttagccgttttattgcgtatacagaagacggcgag
gaagtgcttgccgacaaggtacaggatgtgacacgctgtgtggaggagtatatcggcttg
aaaatggacgattttacgcgcgctgtcgtactaccgcagggaaagtttgcggagttttta
tccttaaagggcagtgaacgcagacagatgctgcagcgtttgttccatctggagaagtac
ggagatcaacttacacagaagctgagccgccgtgtgaaggacaacgacatcgccctgaaa
tcgttggaagcggagcagcaagggctgggggatgcgagtgctgaagcgcttgagcttgta
aagctgcgtcttaaagaagcgattgaccatgcagaggcttcgcgccgcgagctagagcgt
gtttcacgggaagcggaggcgctgaacaaaacacgggaactggtcatcgagcttcgccaa
agagtgaacgagctggaggagatggcaagacaggaaccaggcattgctttgctggagcgt
aagctgcgacaagtatctgcagcggaggcgttgctgcctgcactgacggattggaaagaa
gccgttgtcgaagcagaaaaacgacagaagaatgctgaacaaatggcagtcctggctgcc
tccgcagcggaggcggcgcttgtatctgtgcaagcagacgagcaggctcggcaagcactc
agtgcggaagaaccaaagctgttgcttcggatcgaccaactggagcaggcacttcaactg
gaacgtgatacggaagtgctgcggactgaacgggaacgtttggcggtcgagctggcgcat
agcgaacaaacccttgctgagcatgccgcaggtctcgtaaaggaacaagagttacagaca
cgaggtttgaagcggcagcaggagcttcaacaggagttgaagcaaaatgaagtgcgggca
gatgagcggcgtatgctacaagaggctgtgcagcggctgcaacagctggagacagcgaat
gagcaatggcgtgaagctgaacaggagtattccactcaggagaaacggcttgcgctagca
gacgaacgtttaaagctaatggagcaggagacacaggagacggaggcacggcgttctatt
cttgctgcacaagtggctgaaggcattgaggcgttgctggcgctggaggcggaaattaca
gccgacgtgtcggcactggctgccgaggaggagcagctgcgtcacgagctccgtgccgag
gagctcggacgtctcgcgcagcacctcgctgccgagctgcgtgaaggagagccatgcgca
gtgtgtggctctctgcatcaccccgcgcctgctgctgttgcggcccatggcgcggattcc
tctgcgccggatgagctgcatcgcctgcggctcggcctacaggagctgcgcctcacgctg
cgccagcagttgcacgagcagcgcagcctgctggcgcagcccgccgccgcagacagcggt
gctgccgccacaggcgagccttttacgcctgcggctgctatgcctcgcggtgtcgccgta
tgggcggagcgctgtacagcgctggagcgtgctgcgggtgagctggcagctcgtgcgcat
acgctgcctgccgaggcacaggcactgcgtgaggcggacgccgccggacagcagcggcgt
atccgtgcagccgccgagcaggaggcggcggttgcagcactggcgcaggcgcgcagcaag
cgtgaggcatgcaccacgcgcagcgaggggctacgcgccgaatgggcgacgcagctgccg
gatgtcggccccgaccaagctgcggagcgttatcgcgctatgcaggagcgcgaccggcgt
gcggaggagttacgatcccggctggagatgagcgtgaccttccttgaagaaaaggcagcg
cgtgtacagcagatacagcaaagcatcatcgaggaggacaaaatcattattgcccgtcgt
acagggctgcaaagtaaagatgatttgctgcgtgaaaagcaagaacagctccgaaagtgg
gttggagaaggccaagcagcctcattgctggaagaagcgacctcacgcttgttgggactg
aaaaacggagccgaagccgctgcacgccgccgtaccgaagcggaagaacgtaagcagcag
gccgttcatgcttcattgatagcgcgacaggcctccgactcggcagaagaaagacggcag
acggcagaatcccgttggggtatccgtctggaagcttcctcttttgctacggaagcagag
gtcatggaatgctgcttgggaccggaagaagctgcacgttatgagcgtgaagtgagtttg
caccgagaacgggagaaggagctgtcttcccgcttaaagcatgtcgaagagcagttgaat
ggagcaacagtaacagaggaacagtgggaaacgaccactgcgaggctgcgtgattgccgt
gcacgcgacgaagaggcgcttcagaatcgcgccaaggctgagcgtgatttagaggacttg
cagcgtcggcacgtccgctggatggagctggagtccaatcgtttgcatctgcgtagcgag
gcggaaaaaatgtccaagctccagtctgtttttcgaggtaatgccttcgttgaatatatt
gccgaagagcagctcatgcaggtcagccaatctgcttcacgccgcctgcgttttctgact
aagcagcgctatgcgctagaagtagattccagcggtggttttgttattagtgatgatgcc
aacggtggagtcaaacgtccggtatcgaccttgtccggcggcgaaacgttcctgacctct
ttgtcgcttgcgcttgcgctgtcagctcaaattcaattgcgaggccaataccctcttcaa
tttttctttctggatgaaggctttggaacgttggaccctgaactgcttgacacagtgatt
acctcgctagaaaagctgcatcacgatcaattatctgttggtgtgattagtcatgtgcct
gaattgcgggcccggctcccacgcaagctagttgttcttcccgcagagcagactggtgga
ggctctcgtgtggttatggaaacattttga
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