Paenibacillus polymyxa SC2: PPSC2_16935
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Entry
PPSC2_16935 CDS
T01335
Symbol
addB
Name
(GenBank) ATP-dependent helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ppm
Paenibacillus polymyxa SC2
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_16935 (addB)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSC2_16935 (addB)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PPSC2_16935 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
nSTAND1
AAA_29
ABC_tran
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADO57577
UniProt:
E3E9E6
LinkDB
All DBs
Position
complement(3834720..3838286)
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AA seq
1188 aa
AA seq
DB search
MSVRLLIGRSGSGKSTLIRNEMTSMLREEPLGKPMLLLVPEQSSFASEHALLTEAGNGIQ
GSVRAQVMGFHRLAYLVMQETGGSALVPVTEEGKKMLLYKIIRRRKDELSLFKDSGDQLG
FVDRLNTLFTELKQYGNDARSVPEQLERMHAAGESAPILRGKLKDIGLIYEDFERELTLK
YIDGEDTLRMLTEQIAQSSLIRGADIWMDGYRRFTPHEYKVVEQLMLHASSLTVALTCNR
SYESGQLPHELDLFHPSAATYVKLKGMADELMIETQTQLLRPDPMPRFKERPALAYLEAN
FEHRTGLWNQEQRMRLQQLREQWADTQPEGIKLYAAANRRAELEGAVREMRRLAREEGAR
YREMALFVRHIEDYEPWVEPIFKQYQVPVFLDQRRSILHHPLVELIRASLDIVQRRWRYE
DVFRAVKTDLLLPLDGRVSREQMDRLENYVLACGIQGSRWTDGRPWQAVPSLSLELEEQE
RNRQRDETLDLMELCRDVIVTPLHAFEKRMGKARTALEKCEAVYLLLEDAEIGHKLDAFI
HQAEESGNPEQAKEHRQVWDAVLELLDQIVEMMGDERLDTALFAGVLETGLAEFRMGLVP
PALDQVLVGNTDRTRVSGIQHAFVLGMNEGVMPAVFHEDGVLNEQERTALNEQGVDLAPD
MTRRLLDERFLAYTALTSAGKSLWMSYAVTDEEGKPLLPSELVRHVRQLLPGLDERPLAG
YPLPGDAWTTQWEYASHPSEALPQLIAQLRHWRRGGDILSPWWEVYNWYASQQGREKDKL
RQLLTSLFYENHAEMQKETSRRLYGSKLRTSVSRMERFVACPFSHFASHGLRLKERQMYR
LKAPDIGQLFHAALGEMAINLRERNVSWGSLSTEECRQEAESTVERLAPRLQGEILMSSK
RYGYILRKLKDIVSRASLILGEHARRGSFEPIGLELDFGPGQLLPPLSFRLDNGVVMEIV
GRIDRVDVAEGEKGLLLRVIDYKSSQKDLKLHEVYYGLSLQMLTYLDVLLNAAEEWLGET
AYPAGTLYFHVHNPMLQSPNGLSAEQARQELLKRFKMKGLLLADRDVVGQMDTALDKGYS
SILPVAVKADGSFYSSASVASPEQWDSLLASVRNNIRTIGTRMTEGDVAIEPYRIQQETA
CTFCSFKPVCQFDDSLEGSDYNQWGKPGKDQVWDLLGHTQEGKGGMKQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtccgcttattgattggccgctctggtagtggtaaaagcacgttaatccgcaat
gaaatgacgtctatgttacgcgaggagccgctaggtaaacctatgctgttacttgtgccc
gagcaatcgtcatttgcttcagagcatgcgttgcttacagaagccggaaacggtattcag
gggtcggttcgcgcccaggtgatgggattccatcgtcttgcctatttagtcatgcaggaa
acagggggttcagccctggtgcctgtaacagaagaaggcaagaagatgcttttatataaa
attattcgtcgtcgcaaggatgaactgagtttgtttaaggattcgggagaccaactcggt
tttgtggatcggttgaatacgttgtttacagagttaaagcagtacggaaatgatgctcgg
tctgtaccggaacaactggagagaatgcatgctgcgggggagtccgccccgatattaaga
ggcaagctgaaggatatcggcctaatctatgaggattttgaacgggagctgacgcttaaa
tatatcgatggtgaagatacgcttcgcatgctaacagaacagattgcacagtcttcactt
atacgcggagcagacatttggatggatggctaccgaaggtttacaccgcatgaatataag
gtggtggagcaacttatgctgcacgcctcctcgctgacggtggcgttgacctgtaaccgc
agctacgaaagtggccagcttccgcatgagctggatttgtttcatccttcggcggctacc
tacgtcaagcttaaaggaatggcagacgagctgatgattgaaacgcagacacagttatta
cgtcctgatccgatgccgagatttaaggagcgtccagcgttggcgtatttggaggctaat
ttcgaacatcgtacagggctgtggaatcaggaacagcggatgcggctacagcagctacga
gagcaatgggcagatacacaaccggagggtataaagctgtatgctgcagcaaatcgccgt
gccgagctggaaggagccgtacgcgaaatgcgccgcttggcccgtgaagagggcgcgcgt
tatcgggagatggccttgtttgtgcgtcatattgaagactatgagccatgggtggaaccg
atattcaagcaatatcaggtcccggtatttttggatcagcggagaagtatacttcatcat
cccttagtggaattgattcgggcttcactggatatcgtgcagcgacgctggcgatatgag
gatgtatttcgtgcggtcaaaacagaccttctattgccgctggacggtcgagtgagccgc
gagcagatggaccgtctggaaaactatgtgctggcctgtggaatacaaggcagccgttgg
acagatggccgaccatggcaggctgtacccagcttgtcactggagctggaggaacaggaa
cggaaccgtcaacgggatgaaacgctggatttgatggagttgtgccgagatgtgattgtg
acgcctttacatgcttttgagaagcgtatgggtaaggcacgaacggcgcttgagaagtgt
gaagccgtgtatctgttgctggaggatgcagaaattggtcacaagctggacgccttcatt
catcaggcagaggaatcaggaaatcctgagcaggcgaaggagcaccgccaggtatgggat
gcggtgcttgaattgctggatcaaatcgtcgaaatgatgggtgatgagagactggatact
gctttgtttgcgggtgtgctggaaacgggattggctgagttccgtatggggcttgttcca
ccggctctggatcaggtactggtcggaaatacggaccgtacacgtgtatcgggtattcaa
catgcctttgtgctagggatgaacgaaggagtaatgccggctgtgttccatgaggatggt
gtgctgaatgagcaggaacgtacggcattgaacgaacaaggcgtagacctggcaccagat
atgacaagacgtctgttggacgaacgctttctcgcttatacggcccttacctcagccggt
aaaagcctatggatgagctatgcggtgactgatgaagaaggcaagccattgctgccgtca
gagttagtgcgacatgtgcggcaactgcttcctggtctggatgaacgtccactggccgga
taccctttgcctggagacgcttggacgacgcaatgggagtatgcttcccatccgtccgag
gctttgccgcagctcattgcgcaattacggcattggcggcgtggcggtgatattttatct
ccctggtgggaggtgtataactggtatgccagccagcaggggcgtgagaaggacaagctg
cgtcagctgttgacctcacttttttacgaaaatcatgccgaaatgcagaaggaaacgagt
cgccgtctatatggcagcaagctgcgcaccagcgtatctcgtatggaacgttttgtcgca
tgtccattttctcactttgcctctcacggtcttcgtttgaaggaacgtcaaatgtatcgt
ctgaaggctccggatatcggacaattattccacgcagcgcttggtgagatggcgatcaat
ctgcgtgaacgcaatgtcagctggggaagtctcagcaccgaggaatgtcgccaagaggcg
gaaagtacggtggagcgtttggcacctcgtctgcaaggcgagattttaatgagctccaag
cggtatggctatattttgcgcaagttaaaagacatcgtgagccgtgcttcgctaattttg
ggtgaacatgcacggagaggtagctttgagccgattgggctggagttggactttggacca
ggtcagctgcttcctccgttaagcttccgactagataacggcgttgtgatggaaattgtc
ggacggattgaccgtgtggatgtggcagaaggagaaaaaggattacttctgcgtgtcatt
gattacaagtccagccaaaaggatcttaagctacatgaggtgtattacggcttgtccctg
caaatgctcacgtacctggatgtgctgttgaatgcggcggaggaatggttgggcgagact
gcttatccggcgggtacactgtattttcacgtccacaatccgatgctgcaatcacctaat
ggccttagcgcagaacaggctcgtcaggagcttttgaaacgctttaagatgaagggattg
ttgcttgcggatcgggatgtagttgggcaaatggatacagcattggacaagggatattcc
tctattttacctgttgcggtgaaagcagacggcagtttttatagcagtgcttccgttgct
tcgcctgaacagtgggatagcctgttagcgtcggtgcgcaataacattcggacgattggt
acacggatgacagagggcgatgttgccattgaaccttatcgcatccagcaagaaacggca
tgtaccttctgttcttttaagcctgtttgtcaatttgatgacagtctggaaggcagtgat
tacaaccaatgggggaaaccgggtaaggatcaggtctgggatctgctcggtcatacacag
gaagggaaaggaggaatgaagcaatga
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