Paenibacillus polymyxa SC2: PPSC2_25115
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Entry
PPSC2_25115 CDS
T01335
Symbol
deaD5
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPSC2_25115 (deaD5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppm03019
]
PPSC2_25115 (deaD5)
03009 Ribosome biogenesis [BR:
ppm03009
]
PPSC2_25115 (deaD5)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPSC2_25115 (deaD5)
Messenger RNA biogenesis [BR:
ppm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPSC2_25115 (deaD5)
Ribosome biogenesis [BR:
ppm03009
]
Prokaryotic type
rRNA helicases
PPSC2_25115 (deaD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADO59306
UniProt:
E3EB26
LinkDB
All DBs
Position
5641140..5642585
Genome browser
AA seq
481 aa
AA seq
DB search
MSQKHFADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGI
PLCELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELK
QRTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPNDRVT
MLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQVREADKLALLQDLLVVE
NPDSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADIEAY
IGFAIPQVKAPSEEAVDLHREDFERKLHVKTALKNDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKLDGVTADDIGIITILDNVTDVEILNGKGPLVLEIMKNTTVKGKLLKVRKGH
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagaagcattttgcagattacccattaagtgaagaaattgtgagggctctgaat
agcctgggctatgagacgccaacagaaattcaaacggaggttattcccgttgcgcttgag
aagaaggatcttgtggccaaatcgcaaacaggcagcggcaaaacagcagcatatggtatt
ccactgtgtgagctagtagattggaatgagaataaaccccaagctttaatcctgacacca
acccgtgaactcgcattacaggttactgaagacatcacgaatattggacgctttaagcgg
ataaaagcaacgcctctttatgggaaacatccttttcatatacaaaaggccgagctaaaa
caaaggacacatgtggctgtaggtacgcccggacgtgtactagaccatattgaacgaggc
acactatccttaaatcgaattgcctatctcgtgattgatgaagctgacgagatgctgaat
atgggctttatcgagcaggttcagtcgattattcaggcactgcctaatgaccgggttacg
atgttgttttccgctacttttcccgaagatgtagccaaactgtcacgtaaatatatgaac
gatcctgtggaaattgagattaaggcgacaggtgtaaccacagccacgattgatcactct
cttatccaggtgcgggaggcggacaagctggctctgctacaggatctgctcgttgttgag
aaccctgacagctgcatcattttctgtcgtacgcaggagcatgtagatacactattcaga
gcattggctgacctcgaatatccatgtgatcgcatccatggcggcatggagcaagatgag
cgatttgaggtaatgaacgcattcagaaggggacaattccgttacttgatcgcaactgat
gtagccgccagagggattgatatcacgaatatcacccatgtcatcaactacgatattccc
cttgaaaaagaaagctatgttcatcgtacaggacgtacaggacgtgctggcaaaacaggg
aaagccattactctaatcactcctaaagatagcaaacgattagctgatatcgaagcatac
attggatttgcaattccgcaagtaaaggccccctcagaagaggccgttgatcttcacaga
gaagattttgagcggaaactacatgtaaaaactgcactcaaaaacgacaaacgcgagcaa
ttaaaccaacaaattatgaagctcaattttaatggcggtaagaagaaaaaacttagagct
gtcgactttgtgggcaccatcgctaagctggatggggtaacggcagatgatatcgggatc
attacgattctggataatgtgacagatgttgagattctgaatggcaagggcccactggtg
cttgagattatgaagaatacgaccgtaaagggcaagcttttaaaggtacgcaaaggtcat
aagtag
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