Paenibacillus polymyxa SC2: PPSC2_27945
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Entry
PPSC2_27945 CDS
T01335
Name
(GenBank) hypothetical protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03030
DNA replication
ppm03430
Mismatch repair
ppm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSC2_27945
03430 Mismatch repair
PPSC2_27945
03440 Homologous recombination
PPSC2_27945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppm03032
]
PPSC2_27945
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_27945
Enzymes [BR:
ppm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPSC2_27945
DNA replication proteins [BR:
ppm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPSC2_27945
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPSC2_27945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti-like
tRNA_anti_2
RMI2
Cwp8_D3
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
ADO59423
UniProt:
E3EK96
LinkDB
All DBs
Position
pSC2:377665..381147
Genome browser
AA seq
1160 aa
AA seq
DB search
MRWADLHRHSGYSLLDGGSKISDIVRKTEYAGAITDHGAMFGTLEYYKQMRKAGKLPILG
FEAYAETIQGEKKGNHLLLLAKNEEGFKNLVKLTSKSQENFFRKPHVNYDMLGTYGKGII
SSTSCMGSEVSQLLLKNKYEDAKYVAKALAEIFGKEDYYVELQRHGFDEERIVNPQLIQI
ARELDLKIIGTTDSHYTEKEDAYDHEVLLCIGTVKKMSDYDRMQFPGTGYHLHTSDEVEE
LFSDIPEALENTLEIAEKCSGLTLEMNKVYMPKFNVPAPFVNEMDYLKHLAWQGFKERFE
GTEKDNEEYRERLTFELEVIKGMGFPGYFLIVGDFVDFAKRKGILVGPGRGSVVGALTAY
CLHITDLDPIPLGLLFERFLNPDRVSMPDIDMDFPDDRREEVIDYVKNKYGEHAVSRIIT
FGTMAARAAIKDVGRVLDYPVSMTAKIAKSIPAVPKMTIKKAFKESPEFLKMYETEADVK
KIVDIAMKLEGLPRHASMHACGVVIAPSSISDYIPEILMENKETKLKERTTQFNMAECEE
MGILKMDFLGLRTMTVISKSLSNVNPRRIREGKKPLHYLDIPLNDKRVYQDIAKGESYGV
FQLESGGMRSFMKELFADALQTGENTMELFERLIAGVSLYRPGPLDYIPDYLKNMQNPEN
IQYDHPKLKSILEFTYGVIVYQEQCMFIVRELADFTKGEADNVRKAFSKKKEKMIKPLGE
KFVAGCLKKGISQEVAERIWGKMRKFGEYAFNKSHAGAYSVLSVVTAWLKFYYPVEFMTA
VLNSYINKADKLKLFLSVVKKMKIEILPPDVDRSGQMFTVDGDRIRFGLQGIKGLGKASE
NVIEERAANGEFEDFQDLAERMAKHSKVDKKILEAMVYSGSVDSFPGTRSAKLEVLDKIL
ASASDEKKMHNSGQMDLFSMYEEFKVYKKIVIPDKKEFHKKFKLEKEKEYAGFYISEHPL
DEYASYFAREGVYEIGFIKHEEDEDETIEVEGEVFGGDTNYDGEVVKVAGIITDLKTFYT
KRDQKELKVFTLEDRTGEMKVVCFADRIDANREKIVEGKVVMIQGQVKVDDYDTQIIVKN
MFDIEQIAKSEKPKSIWVKSHNQKQVKSLFNFVKENKGNLPVYVLYQGQAYQSKHSFDLN
YANFAKLQDMFGHNVKVLYA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
attcgctgggcagaccttcatagacacagcgggtacagtcttttggatgggggaagtaag
atttccgacatcgttagaaagacggaatatgctggagccataacagatcatggcgctatg
tttgggacactggaatattacaagcaaatgcgtaaggctggaaaattgccaattctgggc
tttgaggcgtatgcggaaacgattcagggagagaaaaaaggaaaccatttattgttgtta
gctaaaaatgaagagggatttaaaaatcttgttaagcttacatcgaaatcacaggagaac
ttttttcgaaaacctcatgtgaactatgacatgttagggacatatggaaaaggaatcatt
tcttcaacttcttgtatgggtagcgaagtttcacagttgttgcttaaaaacaaatatgaa
gatgcaaagtacgtggctaaagcacttgcagagattttcggtaaagaagattactatgtg
gaattacagcgccatggatttgacgaagaacgtatcgtgaatccacagcttatacaaata
gcgagagaattggatttaaagatcattggaacaacagacagtcattatacggaaaaagaa
gatgcttacgatcatgaggtactactttgcatcggaacagtcaagaaaatgtcagattat
gatcgaatgcaatttccgggtacgggatatcatcttcatacttcggatgaagttgaagag
cttttttctgatataccagaagcgcttgaaaacacccttgaaatcgcagaaaaatgcagt
ggtcttacactggaaatgaataaagtttacatgcctaagtttaatgttccagcgccattt
gtgaatgaaatggattatctgaaacacttggcatggcaggggtttaaggagcgatttgag
ggtacggagaaagataatgaggaataccgtgaacgcctgacctttgaactggaagtgatt
aaggggatggggttccctggttacttcttgattgtaggggactttgttgattttgctaaa
cgcaaaggaattttggtaggtccaggtcgtggctctgtcgttggagcattaacggcatat
tgtcttcacattacagatttggatccgattcctctcggattgctatttgaacgtttcttg
aatcctgatcgtgtttcaatgcctgatatcgacatggatttccccgatgatcggcgtgaa
gaagttattgattacgttaaaaataaatatggtgagcatgccgtatcgagaattattaca
tttggtacaatggcggcaagagcagcaatcaaggacgtaggtcgtgtattggactatcct
gtttcgatgacagccaagattgcaaagagcattcccgctgtgcccaaaatgacgattaaa
aaggcctttaaggagtcgcctgagtttttaaagatgtatgagacggaagcagacgtcaag
aaaattgtagacatagcgatgaaactggaggggcttcctcggcatgcttccatgcatgct
tgtggtgtcgtgattgctccttcatccattagtgattacattccagaaattttaatggag
aacaaggagacaaagctcaaagaacgtacaactcaatttaacatggcagaatgtgaggaa
atgggaattctaaaaatggatttcttaggacttcgcacgatgactgttatttctaaatcg
ttatccaatgtaaacccaagacgtatacgcgaggggaaaaagcctttgcattacttggat
atccctttaaatgataaaagggtatatcaagatattgcaaagggagaaagttatggtgtg
ttccagttggaatcagggggaatgcgttcctttatgaaagaactgtttgcagatgctttg
caaacaggagaaaacacgatggagttgtttgagcggttgattgctggagtaagcttatat
cgtcctggtccgcttgattatatccctgattacttgaagaatatgcaaaaccctgagaac
attcaatacgatcatcccaaactcaaaagtattcttgagtttacgtatggagtcattgtt
tatcaggaacagtgtatgttcattgttcgtgaattggcagacttcacaaaaggagaagcc
gataatgtacgaaaagcattttctaagaaaaaagaaaaaatgattaagccgcttggtgaa
aagtttgtcgcaggatgtctgaaaaagggaatttcgcaagaagtagccgaacgtatttgg
ggcaagatgaggaaatttggtgagtacgcttttaataaaagccatgcgggggcatattca
gttctctccgttgttacagcgtggttaaaattctactatccggtagaatttatgacggct
gtattgaactcctatattaataaagcagataagttgaagctttttctttcagttgtaaaa
aagatgaaaatcgaaattcttccaccagatgtagatcgctcaggtcaaatgtttacggtt
gatggtgatcgaattcgttttggtttgcaaggtattaaaggacttgggaaagcgtctgag
aatgtgatcgaagaaagagctgccaatggcgaatttgaagattttcaggatcttgctgaa
cggatggctaagcattccaaagtcgataaaaagattttggaagccatggtatattcgggc
tcagtagattcttttccagggactcgtagtgcaaagcttgaagtgcttgataaaatactt
gcttctgcttctgatgagaaaaaaatgcataactcaggacaaatggacttgttttcgatg
tatgaggaatttaaagtgtataaaaaaattgtcattcccgataaaaaggaatttcacaag
aaatttaaattggagaaagaaaaggagtatgcgggattttatatatcggagcatcccctc
gatgaatatgcgagttattttgcaagagagggtgtctatgaaatcggatttattaagcat
gaagaagatgaggatgaaacgatagaggttgaaggagaggtgtttggaggggatacaaat
tatgatggagaggttgttaaggtagctggcatcattacggatttaaaaacattttatacg
aagcgtgatcagaaagagctgaaagtctttacacttgaagatcgaacaggcgaaatgaaa
gtggtttgtttcgcagatcggatcgacgccaatcgagaaaaaatagtcgagggtaaagtt
gttatgatccaaggacaagtcaaagtcgatgattacgatacacaaatcattgtaaaaaat
atgtttgatattgaacaaatcgcaaaaagtgaaaaacctaaatccatttgggtgaaaagt
cataatcaaaagcaagtgaaatcgctatttaatttcgtgaaagaaaataagggtaatctt
cctgtctacgtgttgtatcaggggcaagcttaccaatccaagcatagttttgatttaaac
tacgctaatttcgccaagttgcaagatatgtttggacataacgtgaaagtcctatatgca
taa
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