Paenibacillus polymyxa SC2: PPSC2_28660
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Entry
PPSC2_28660 CDS
T01335
Name
(GenBank) helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03420
Nucleotide excision repair
ppm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPSC2_28660
03430 Mismatch repair
PPSC2_28660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_28660
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPSC2_28660
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPSC2_28660
MMR (mismatch excision repair)
Other MMR factors
PPSC2_28660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
DEAD
Herpes_V23
ResIII
Rttp106-like_middle
Motif
Other DBs
NCBI-ProteinID:
ADO59901
UniProt:
E3EKZ6
LinkDB
All DBs
Position
pSC2:497098..499311
Genome browser
AA seq
737 aa
AA seq
DB search
MEVDFFEQKKQETGVNLSAVQREAVEHTEGALLVLASPGSGKTTMMIMKIGYLIEEKDVD
PSRIRAVTFSNASATDMDNRFDKLFPHLKDNKVKFSTIHSFAFEVVRAYFKKNNIRYQLI
EGNMDKPNSEPCRVVNKLNKRIILRRIFREVTQENVTEEQMEELLSYISYIKNKLIPYDQ
LEDIETSIPSASEIFLSYEEFKCADFTNRLVDYDDMLVIANDALEKDAGMLAEYQSMFDY
FLTDESQDNSLVQNLIIEKLVRLKGNICVVADDDQSIYGWRGAAPEYLLNFKEVYPNAKI
LYMVQNYRSTKDIVEVANQFIKRNKNRYDKEMFTEKESFKPIQLSHLDTYEAQIRHIVEK
VKYAPVKKEVAILYRNNSSSIALIDELEHQGIPFYIKDSDNKFFSHWIIEDILNFMRMSY
SDKHPILLEKIHTKFNGYINKPQIEYLKEINNKASVFDNLLKLNVPVYQRKNLGKCKEIF
KRINQLRPDQAIRVIRDELGYEKKLVKMCESLGFKKEYLLSILNTLQGIGSKLETLKDFA
ERLNYLRKVLSQSKFEKGKDVVTLSTFHSSKGLEFNQVIMIDLIEGVIPSKEVIKDFKSG
KIDEMEEAVRLFYVGMTRARTDLELISYKRKDGESVQESSFVKDVKQIMFPNKGSKKKNV
NQAKKIAFSDRSNAFKNIEEVTIGSKVKHATFGLGNIINVDTQIISIRFEKIGMKNLAAK
ICIEKGLLEAVAIADVG
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgatttctttgaacagaaaaagcaagaaacaggggttaatcttagtgctgtt
caacgtgaggctgttgaacatactgaaggagctttgcttgtccttgcttcaccaggttca
ggaaagacaacaatgatgatcatgaagattggatacctgattgaggaaaaagacgtagat
ccatctcgaattcgtgctgtaacattcagtaatgcttctgcaacggatatggacaaccgt
ttcgacaagctctttcctcatctaaaagataataaggtgaaattttcgacgatccatagc
ttcgcgtttgaagtggtgagggcgtatttcaaaaaaaacaatattcgttatcaattgatt
gaagggaatatggacaagccaaattcagagccttgtcgcgtagtaaataagctcaacaaa
agaattattttgcgtagaatctttcgtgaagtaacacaggaaaatgtgacggaagaacaa
atggaagagttactttcctacattagttatataaaaaataagcttatcccttatgaccaa
ttagaagatattgaaacaagcattccttcagcctcagagatatttttatcctatgaagag
tttaaatgtgcggattttacaaatcggttggttgattatgatgacatgcttgtcatagct
aatgatgctttggaaaaagatgctggcatgttggctgaatatcaaagcatgtttgattat
tttttaaccgatgaaagtcaagataactcgttggttcaaaatctcattattgagaagctg
gtccggttaaaaggaaatatttgtgtcgttgcagatgatgaccagtcgatctatggctgg
agaggggcagctcctgaatatcttcttaacttcaaagaagtgtatccgaatgcgaaaata
ctttatatggttcaaaattatcgttccacgaaagatattgtcgaagttgcaaatcaattt
attaagcgaaacaaaaatcgatatgacaaagagatgttcacagagaaggaatcctttaaa
ccgatccaactatcacatttggatacgtatgaagcacaaatccgtcatattgtagaaaag
gtgaagtacgcgcctgtgaaaaaggaagttgcgattctatatcgcaacaattcatcttcg
attgcactcattgatgaattagaacatcaggggattcctttttatatcaaggattcagat
aacaaattttttagtcattggattattgaagatatactgaattttatgcgaatgtcttat
agcgacaagcatccaatcttgttagagaaaattcacaccaaatttaatggttacattaat
aagccgcaaatcgaatatctaaaagagattaacaataaagcatctgtatttgataatctg
ttaaagttgaacgttccagtatatcaacgaaaaaatttaggaaagtgtaaagagatattt
aagcgaataaaccagttgcgtcccgaccaagctatccgcgtcattcgtgacgagcttggt
tatgaaaaaaaactcgttaaaatgtgcgaaagtctcggatttaaaaaagaatatttgcta
agtattttgaacaccttgcaagggattggatcaaagcttgagactttgaaagactttgca
gaacggttaaactatttgaggaaagtccttagtcaatcgaagtttgaaaaaggaaaggat
gttgtgaccctatcaacattccacagctcaaaaggcttggaatttaaccaggtgatcatg
attgaccttattgaaggcgtcattccgtcgaaagaagtcattaaagatttcaaaagtggg
aaaattgacgaaatggaggaagcagtccgcttgttctatgttggaatgaccagagcaagg
actgatcttgagctcatcagttataagcgaaaagatggcgaatctgtgcaagaatcctcg
tttgtaaaagatgtaaaacaaattatgttcccgaataaaggtagcaaaaagaaaaatgtg
aatcaagcgaaaaaaatagctttctctgatcgatctaatgcatttaaaaatatcgaagaa
gtgaccatagggagcaaagttaaacacgcaacttttggactgggaaatatcataaacgta
gacactcaaattatcagtattcgatttgaaaaaataggaatgaaaaacctggcagcaaaa
atctgcattgagaaaggtttattagaagcagttgccattgcagatgttggctaa
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