Paludibacter propionicigenes: Palpr_0099
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Entry
Palpr_0099 CDS
T01362
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Palpr_0099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppn03019
]
Palpr_0099
Enzymes [BR:
ppn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Palpr_0099
Messenger RNA biogenesis [BR:
ppn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Palpr_0099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ADQ78261
UniProt:
E4T071
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All DBs
Position
111201..112532
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AA seq
443 aa
AA seq
DB search
MTFTDFNINSPLLNALSDLGLTQPTTIQEKAYPVIMSGKDMVGIAQTGTGKTIAYLLPCL
RQWKFTKEKHPQILIVVPTRELVIQVVEQVEKLTTYMSVRVVGVYGGVNMIRQTPLVVAG
VDVLVATPGRLLDLALNGSLKLKSIKRFVIDEVDEMLNLGFRPQLVRIIDLLPTKRQNLM
FSATISEELKDLVHDFFVEPLEIEAAPTGTPLENIKQIGFRVPNFYTKVNMLEFLLNNHP
EFSKVLVFTSTKKLADALYDEIASKFPGQFGLIHSNKSQNNRFESMRGFKESEYRVLIAT
DIVARGLDISDVSHVVNFDVPEVPENYMHRIGRTGRADKKGVALTFITKADKEYREAIEA
LMNKKIPMTAMPEEVEVSKELTLDEMPQVTMKNTLVKLPKKEEGGEAFHEKKDKNKKVNM
KVRRAAAMKIKYKKPKTRGQKTK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaccgactttaatattaactcaccgcttctcaatgccctttcagacttggga
ttgactcaacctaccacgattcaggaaaaagcttatccagtaattatgtccggtaaggat
atggtgggaatagcgcaaacaggaaccggaaagactatagcttacctgctgccttgtctg
cgtcaatggaaatttacgaaagaaaaacatcctcagattttaatagttgttcctactcgt
gaacttgttattcaggttgttgaacaggttgaaaaactgaccacttatatgagtgttcgg
gtagtgggagtctatggaggtgtaaatatgattcgtcagactccgctggttgtagccggt
gtggatgttttggttgccactcccggtagattattggatttggcgctcaatggtagcctg
aagctcaaatcgattaaacgatttgtgattgatgaggtggatgaaatgctgaatctggga
tttcgtcctcagttggttcgcattatcgacttgttgccaacaaaacgtcagaacctgatg
ttttcagcgactatttcggaagagctaaaagatttggttcacgatttctttgttgaacca
cttgaaattgaagctgctccaaccggtacgccacttgaaaatatcaaacagattggattc
cgtgtaccaaacttctacaccaaggtgaatatgttggaattcttgctgaacaatcatcct
gaattttccaaggtgctggtgtttacttctacgaagaaactcgctgacgctttgtatgat
gagattgcctcaaagttccctggtcagtttggtttgattcactctaataagagccagaat
aaccgttttgaatccatgagaggtttcaaggaaagtgaatatagagtgttgattgctacg
gatattgtggctcgtggtttggatatttcggatgtatcgcacgtggttaacttcgatgtt
ccagaagttccggagaattatatgcaccgtataggccgaaccggacgtgctgataaaaaa
ggcgttgcattgacttttatcaccaaagccgacaaagaataccgtgaagcgatagaggcg
ctgatgaataaaaaaattccgatgacagccatgcccgaagaagtggaggtgtcaaaagag
ctgaccttggatgaaatgccgcaagtgactatgaaaaatacgctggtaaaacttcccaag
aaagaagaaggaggggaggcttttcatgagaaaaaagataagaacaaaaaagtaaatatg
aaggtacgccgggcggctgccatgaaaataaaatataagaagcccaaaactagaggacag
aagactaaatag
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